Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g02260 ATGGCTCTGAATCTCAGACTCCATACACTCATATTCCTTCTCCTTCTCTTCTCCTTCTGTACTCCATCATTTTCAGATTCAGTTCCATCTCCCAATTCCCAATGCGAAGCTCAGCTGCAACAAGGCTGCCATGACAGAGCCGAGGCCCTCAAACTCAAGCTCATCGCCATCGCTTCCATTTTAGTCGCGAGCATGATCGGCGTTTGTCTTCCCCTCTTCTCCCGCGCCGTGCCGGTGCTTCAACCAGAGAGAAAGCCCTTCGCAATCGTTAAGGCATTTGCCTCCGGTGTGATTCTAGCCACTGGATATATGCACGTTCTCCCCGATTCCTTCGATTGCTTGACATCCCCCTGTTTGCCAGAGAATCCATGGCGGAAATTCCCTTTCCCAACATTCATAGCAATGCTTTCCGCTGTTATGACTCTAATGTTGGACTCGTTTTCAATGAGTCGCTACAATAAAAAGTTGATGCAGGATCAAGAAGCCGCAGACGAGGAGGAGAACGAGGATCGCAAGGAAATCAGTGACAATTTTGGGAAAGAAGAAGGAATAATCGAGAAAAAACTTGGTTCGCAATTGCTACGGTACCGTGTTGTTGCTCAGTTATTAGAAGCGGGGATCGTTGTGCATTCGGTGGTGATAGGGCTTTCAATGGGGGCTTCAGATAATCCGTGTACCATAAGACCGCTCATCGCTGCTCTGTGCTTTCATCAGCTGTTTGAAGGGATGGGGCTTGGAGGGTGCATTTTGCAGGCGGAATATAGGTTGAAGATGAAGGCGATAATGGTGTTTTTCTTCTCGGTTACAACGCCGTTTGGAATAGCATTGGGCATTGGGTTGTCGAATGTGTACAGTGAGAACAGTCCCACGGCTCTTATAGTTGTGGGAATTTTGAATGCTTTATCTGCTGGGTTGTTGAATTATATGGCATTGGTTGATTTGTTGGCGCATGATTTCATGGGGCCTAAATTGCAAGCCGATATCAAGCTGCAAATATGGGCTTATGTTGCTGTTTTGTTCGGCGTTGGTGGCATGTCATTGATGGCAAAATGGGCTTAG 1059 47.31 MALNLRLHTLIFLLLLFSFCTPSFSDSVPSPNSQCEAQLQQGCHDRAEALKLKLIAIASILVASMIGVCLPLFSRAVPVLQPERKPFAIVKAFASGVILATGYMHVLPDSFDCLTSPCLPENPWRKFPFPTFIAMLSAVMTLMLDSFSMSRYNKKLMQDQEAADEEENEDRKEISDNFGKEEGIIEKKLGSQLLRYRVVAQLLEAGIVVHSVVIGLSMGASDNPCTIRPLIAALCFHQLFEGMGLGGCILQAEYRLKMKAIMVFFFSVTTPFGIALGIGLSNVYSENSPTALIVVGILNALSAGLLNYMALVDLLAHDFMGPKLQADIKLQIWAYVAVLFGVGGMSLMAKWA 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 36529016 36530074 - ClCG01G023120.1 Cla01g02260 265849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g02260 352 Pfam ZIP Zinc transporter 51 349 IPR003689 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Cla01g02260 352 Coils Coil 149 169 - -
Cla01g02260 352 PANTHER ZINC TRANSPORTER 7 32 352 - -
Cla01g02260 352 TIGRFAM zip: ZIP zinc/iron transport family 35 352 IPR004698 GO:0005385|GO:0016021|GO:0071577
Cla01g02260 352 PANTHER ZINC/IRON TRANSPORTER 32 352 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00903 Cla-Chr1:11659634 Cla01g02260 Cla-Chr1:36529016 1.24E-140 dispersed
Cla01g02260 Cla-Chr1:36529016 Cla11g01645 Cla-Chr11:30141037 5.44E-106 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g02260 K14709 - csv:101204028 548.125