Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g02275 ATGGAGTCCCAGTTGCTCTCACGCTCCACTTCCTTCGCCGGCGGCATTCCCACTCTCCGCAAGTTGCACAGAGACACCATCACTAACAACAACCATGTCGCCTTCGTCCACACCAGGCCCATCGCCGAGGGAGCCAACTTGATCTGGGGAAGACAACTCCGCCCCTCTTTACTGCTCGATACGCCGCATCTACTCTCCGCTAAACGGGAGACGATTCGCCCTACCTTTGCGGCGGCCTCCTCTTCTTCCGCCGGAGGTAGCGATTCCGCCGGGGAGGCGAAGGTTGCTCCGGTGGGGTTCTTAGAGAAGTATCCGGCGTTGGTCACCGGATTCTTCTTCTTTATGTGGTACTTCCTGAACGTGATTTTCAATATCCTCAACAAGAAGATATATAATTACTTCCCCTATCCATATTTTGTGTCGGTGATCCATTTATTGGTTGGGGTGGTGTACTGTTTGATAAGCTGGGCTGTGGGTCTTCCTAAGCGAGCACCTATTGATTCAACCCTCCTGAAGTTGCTGATCCCTGTAGCTTTCTGTCATGCACTTGGCCATGTCACTAGCAATGTCTCATTCGCGGCTGTTGCTGTCTCATTCACTCATACAATCAAAGCTCTGGAACCGTTCTTTAACGCTGCCGCTTCTCAATTCATTTTGGGGCAACCCATTCCCATTACCTTGTGGCTTTCATTGGCTCCCGTTGTCATTGGTGTGTCAATGGCATCCTTGACTGAGCTTTCATTTAACTGGACTGGTTTCATTAGTGCTATGATTTCCAATATCTCCTTTACCTACAGAAGTATTTATTCAAAGAAAGCCATGTTAGCAACCAACACCTTAGAGAGGGTGGCACCACTTACCCATGCAGTTGGAAATGTGCTGAAACGTGTATTTGTGATTGGATTCTCCATCATTATCTTCGGTAACAAAATCTCTACACAGACTGGTATTGGAACCGGCATTGCAATTGCAGGAGTAGCACTTTACTCTTACATCAAGGCTAAGATGGAAGAAGAGAAACGAGTGACGAACAAAGGTGGCTTGAAGAAGCATGGGATGGAGGTGACGGGAAGCATGGAATTGAGAGGAGGATTTGGTGTTGTAAATTTTAAAATAATTCCATCTACAAGAAAAAGGGAAAAAGAAAAAGTTACTTTGGAACTCAATATTGGTACGGAACAACNAATCTCTACACAGACTGGTATTGGAACCGGCATTGCAATTGCAGGAGTAGCACTTTACTCTTACATCAAGGCTAAGATGGAAGAAGAGAAACGATTTTATTGTTTGGACAGCGAACAAAGGTGGCTTGAAGAAGCATGGGATGGAGGTGACGGGAAGCATGGAATTGAGAGGAGGATTTGGTGTTGTAAATTTTAA 1380 46.3 MESQLLSRSTSFAGGIPTLRKLHRDTITNNNHVAFVHTRPIAEGANLIWGRQLRPSLLLDTPHLLSAKRETIRPTFAAASSSSAGGSDSAGEAKVAPVGFLEKYPALVTGFFFFMWYFLNVIFNILNKKIYNYFPYPYFVSVIHLLVGVVYCLISWAVGLPKRAPIDSTLLKLLIPVAFCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQPIPITLWLSLAPVVIGVSMASLTELSFNWTGFISAMISNISFTYRSIYSKKAMLATNTLERVAPLTHAVGNVLKRVFVIGFSIIIFGNKISTQTGIGTGIAIAGVALYSYIKAKMEEEKRVTNKGGLKKHGMEVTGSMELRGGFGVVNFKIIPSTRKREKEKVTLELNIGTEQXISTQTGIGTGIAIAGVALYSYIKAKMEEEKRFYCLDSEQRWLEEAWDGGDGKHGIERRIWCCKF 459
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 36648025 36653484 - ClCG01G023270.1 Cla01g02275 265864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g02275 459 Pfam Triose-phosphate Transporter family 108 275 IPR004853 -
Cla01g02275 459 PANTHER SOLUTE CARRIER FAMILY 35 395 432 - -
Cla01g02275 459 PANTHER BNAC02G47130D PROTEIN 41 274 - -
Cla01g02275 459 PANTHER BNAC02G47130D PROTEIN 395 432 - -
Cla01g02275 459 PANTHER BNAC02G47130D PROTEIN 275 353 - -
Cla01g02275 459 PANTHER SOLUTE CARRIER FAMILY 35 41 274 - -
Cla01g02275 459 PANTHER SOLUTE CARRIER FAMILY 35 275 353 - -
Cla01g02275 459 SUPERFAMILY Multidrug resistance efflux transporter EmrE 151 244 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02275 Cla-Chr1:36648025 Cla05g02395 Cla-Chr5:35508534 2.10E-117 dispersed
Cla01g02275 Cla-Chr1:36648025 Cla10g00522 Cla-Chr10:6894821 5.30E-46 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g02275 K15283 - csv:101220728 530.406