Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g02278 ATGCCTTTATGGCCCTTCCTCTTCCTCTTCTGTTTCCCTCTGTTTTCCTTCTCCCTCAACCAAGAGGGTTATGTTCTCTACACCTTTAAGCGCTCCGTTGAGGATCGTAACAATGTCTTCTCCACTTGGCACGAAGCCGACCCCGATCCCTGTTCATGGGATGGCATCACCTGCGACGCCCATCATCACGTTATTTCTGTTGATCTCTCTAGCTCTCGTATTTCTGCTTCTTTCCCTCTTCAACTCTGTAAGCTTCCGCATCTCCTCTACCTTTCTCTTTACAACAATACCTTCCATTCCCTTCTTCCCGCCGGGATTTCCAATTGTAGCAGCCTCGAGTTTCTTGACCTTAGTCAAAATCTCCTCACCGGTCCTCTGCCTCCCTCCATTGCTGATTTGCCCAATATCCGATACTTGGATTTGTCTGGCAACAATTTCTCCGGCGAAATACCACCCTCCTTCGGTCGGTTTCGGAAACTTGAGGCGTTTTCAATTGTTTTGAATCTTGTGAGTGGTACAATTCCTCCGTTTCTTGGTAACATTACTACTCTTAGGATGTTGAATATGTCTTACAACTCGTTTTCGCCCGGAAGAATCCCGCCGGAGCTGGGTAGTCTGGTGAATCTTGAGGTTCTTTGGTTGACGGCTTGTAATTTAGTGGGGGAGATTCCTGAGTCGCTGGTAGGTCTGGAGCAACTTGTTCTTCTAGATTTGAGCATTAACAATCTTACTGGGCCGTTCCCGCGGGCGCTGACGGAGTTAACCCACGTGACCCAGATTGAGTTATTTGGCAATAAGTTAACCGGCGTGTTACCGAATGAGTTTTCGAAACTCAAGTCGCTGCGGTTGTTCGACATCTCGATGAATAATCTCGCTGGGCCAATTCCGGGTAGCTTGTTTGAGTTGCCGCTTGAAAGTCTTAATGCGTTTGAGAATAATTTCGAGGGGAGCTTGCCGGAAAGCATAGGGGAGTCGAGGACTTTGAGAGAGATAAAGCTATTTGCGAACAGATTCACAGGGTCGTTACCAACACATTTGGGGAAATATTCACCTCTAGAATCGTTGGACATTTCGGACAACTTCTTTTCCGGCAGGCTCCCCGAGAACTTGTGTGAGAAGGGGGCATTGATAGAGATAATGTTGATCAACAACCTGTTTTCCGGCGAACTCCCGTCGAGTCTTGGTAATTGTCAGAGTCTGACCAGGATGCGATTAGGGAACAACAATTTTACGGGTTCTGTACCAGAAAATGTATGGGGACTTTCAGATGTTGCTCTTATGGAACTTGCAAACAACTCCTTCTCTGGCCCAATCTCAAAGAAAATAGCCAACGCCAAGATGCTGAATTTGCTTCTTATTTCTAATAACAATTTCTCAGGAACAATTCCAGAGGAGATTGGTTCTTTGGAGAATATGGTAGAGTTTTCCGCCGACCATAACAAGTTCATAGGAAATATCCCTGAAAACCTTACAAAAATGGATCGACTTGCTAAGTTAGATCTTCAAAACAACAGACTTTCGGGGTTGCTCAACTACAGGCTTGATGCCTGGGAGAGGCTGAATGAGCTCAATCTGGCCAATAATAACTTCTCTGGGCCAATTCCCCCGGAAATTGCTAGCTTGCCAGTGCTTAATTACCTCGATCTTTCAGGCAATCAATTTTCTGGGGAAATCCCAAATGGGTTACAGAATTTGAACCTCAATGTTCTGAATCTGTCATACAACCAATTAACTGGGACACTTCCTTCATATTTCGAGAGATCAATGTACAAAAATAGCTTTCTAGGCAATCCTGATTTATGTAGGGAGGAAAACGATGCGTGTCATACAGTTCAGTCTACAAGAAATGGAGGAGGAGGAGGAGGAGGTTGTGATGAGGGAGGAGGTTGCATTTGGCTGCTGCGATCCTTCTTTGTATTTGCAGGTTTAATTTTCTTTGTGGGAGTGGTTCTATTCCACGTCAAGTACAGGACATTCGTCAAGGCAAGAAGTCTCAACATCAAATCAAAATGGACAATGATATCGTTCCAAAAGCTCTCTTTTGGTGAGGACGAGATTGTGGGTTCCCTAGATGAACACAATGTGATAGGCAGTGGAGGCTCTGGCCTAGTTTACAAGGTTGCTCTCGCCAATGGCGAAACCATTGCAGTTAAGAAACTTTGGCCCGAGCTGCCCAATGACTGCCCGAGCATCGATCTGGAGAAAAATTGGACTGAAATTAATGCTTTTGATGCAGAAGTGAAGACTTTGGGTGAAATCAGGCACAAAAACATAGTGAAACTTTTGTGTTGTTGTACCAATGGAGACTGCAAGCTTTTGGTCTTTGAATACATGCCTAATGGGAGCTTGGGTGATATGCTTCATGGTAGTAGAAGTGAGTTATTGGATTGGCCAACACGATACAAGATAGCCTTGGATGCTGCTGAGGGGCTTTCTTATCTTCATCATGATTGTGTTCCTCCAATTGTACACAGAGATGTCAAGTCCAATAACATTTTGTTGGATGCTGAATTCGGAGCTAAGATAGCAGATTTTGGAGTAGCTATGGCTGTCGATATATCCCAGGGTAAATCCATGTCAGTGATTGCTGGTTCTTGTGGCTATATTGCCCCAGAGTATGCTTATACATTGAAAGTGAACGAGAAGAGCGACATCTTTAGCTACGGGATGGTTATCCTTGAATTGATAACGGGGAAGCGGCCGATCGACTCCGAGTTCAAAGAAAACGATCTGGTGAAATGGGTATGCACCACTTTAGAAGAAGAAGGCGTTAACCATATTCTAGACCCCAAATTGGATTCGTGTCACCAGGAGGAAATGTTGAAGGTCCTCAACATAGGCCTCCTATGCAGCAGTCCTCTACCTATCAACCGCCCATCCATGAGACGAGTGGTTACAATGTTGTTAGAAGTTCGCACGGATAGCAATTCGAAGATTGGAAGGAGAAAGGGAAGATTGACACCATATTATTTCGAGGATGTTTCGGATAGTGGAAATGTGAGCAAGGCAGAGAATAGAGGTCAACAATGA 3030 44.85 MPLWPFLFLFCFPLFSFSLNQEGYVLYTFKRSVEDRNNVFSTWHEADPDPCSWDGITCDAHHHVISVDLSSSRISASFPLQLCKLPHLLYLSLYNNTFHSLLPAGISNCSSLEFLDLSQNLLTGPLPPSIADLPNIRYLDLSGNNFSGEIPPSFGRFRKLEAFSIVLNLVSGTIPPFLGNITTLRMLNMSYNSFSPGRIPPELGSLVNLEVLWLTACNLVGEIPESLVGLEQLVLLDLSINNLTGPFPRALTELTHVTQIELFGNKLTGVLPNEFSKLKSLRLFDISMNNLAGPIPGSLFELPLESLNAFENNFEGSLPESIGESRTLREIKLFANRFTGSLPTHLGKYSPLESLDISDNFFSGRLPENLCEKGALIEIMLINNLFSGELPSSLGNCQSLTRMRLGNNNFTGSVPENVWGLSDVALMELANNSFSGPISKKIANAKMLNLLLISNNNFSGTIPEEIGSLENMVEFSADHNKFIGNIPENLTKMDRLAKLDLQNNRLSGLLNYRLDAWERLNELNLANNNFSGPIPPEIASLPVLNYLDLSGNQFSGEIPNGLQNLNLNVLNLSYNQLTGTLPSYFERSMYKNSFLGNPDLCREENDACHTVQSTRNGGGGGGGCDEGGGCIWLLRSFFVFAGLIFFVGVVLFHVKYRTFVKARSLNIKSKWTMISFQKLSFGEDEIVGSLDEHNVIGSGGSGLVYKVALANGETIAVKKLWPELPNDCPSIDLEKNWTEINAFDAEVKTLGEIRHKNIVKLLCCCTNGDCKLLVFEYMPNGSLGDMLHGSRSELLDWPTRYKIALDAAEGLSYLHHDCVPPIVHRDVKSNNILLDAEFGAKIADFGVAMAVDISQGKSMSVIAGSCGYIAPEYAYTLKVNEKSDIFSYGMVILELITGKRPIDSEFKENDLVKWVCTTLEEEGVNHILDPKLDSCHQEEMLKVLNIGLLCSSPLPINRPSMRRVVTMLLEVRTDSNSKIGRRKGRLTPYYFEDVSDSGNVSKAENRGQQ 1009
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 36660917 36664174 + ClCG01G023300.1 Cla01g02278 265867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g02278 1009 PANTHER RECEPTOR-LIKE PROTEIN KINASE HSL1 7 981 - -
Cla01g02278 1009 Gene3D Ribonuclease Inhibitor 269 612 IPR032675 -
Cla01g02278 1009 Gene3D Phosphorylase Kinase; domain 1 669 777 - -
Cla01g02278 1009 Pfam Leucine rich repeat 495 554 IPR001611 GO:0005515
Cla01g02278 1009 Pfam Leucine rich repeat 86 146 IPR001611 GO:0005515
Cla01g02278 1009 SUPERFAMILY L domain-like 304 605 - -
Cla01g02278 1009 Pfam Leucine rich repeat N-terminal domain 20 59 IPR013210 -
Cla01g02278 1009 Gene3D Transferase(Phosphotransferase) domain 1 778 988 - -
Cla01g02278 1009 SMART LRR_typ_2 206 230 IPR003591 -
Cla01g02278 1009 SMART LRR_typ_2 254 277 IPR003591 -
Cla01g02278 1009 SMART LRR_typ_2 133 157 IPR003591 -
Cla01g02278 1009 SMART LRR_typ_2 493 516 IPR003591 -
Cla01g02278 1009 SMART LRR_typ_2 85 109 IPR003591 -
Cla01g02278 1009 SMART LRR_typ_2 541 564 IPR003591 -
Cla01g02278 1009 SMART LRR_typ_2 278 302 IPR003591 -
Cla01g02278 1009 ProSitePatterns Protein kinases ATP-binding region signature. 696 719 IPR017441 GO:0005524
Cla01g02278 1009 ProSiteProfiles Protein kinase domain profile. 690 969 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g02278 1009 Gene3D Ribonuclease Inhibitor 169 268 IPR032675 -
Cla01g02278 1009 Gene3D Ribonuclease Inhibitor 18 168 IPR032675 -
Cla01g02278 1009 SMART serkin_6 690 990 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g02278 1009 SUPERFAMILY L domain-like 42 302 - -
Cla01g02278 1009 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 7 981 - -
Cla01g02278 1009 ProSitePatterns Serine/Threonine protein kinases active-site signature. 822 834 IPR008271 GO:0004672|GO:0006468
Cla01g02278 1009 Pfam Leucine Rich Repeat 566 586 IPR001611 GO:0005515
Cla01g02278 1009 Pfam Protein kinase domain 692 944 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g02278 1009 SUPERFAMILY Protein kinase-like (PK-like) 686 968 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02278 Cla-Chr1:36660917 Cla02g00229 Cla-Chr2:2383335 0 dispersed
Cla03g00956 Cla-Chr3:16487704 Cla01g02278 Cla-Chr1:36660917 2.33E-16 transposed
Cla06g00166 Cla-Chr6:1892684 Cla01g02278 Cla-Chr1:36660917 1.87E-08 transposed
Cla01g02278 Cla-Chr1:36660917 Cla03g00748 Cla-Chr3:9083328 5.54E-26 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80303 PF00069 Pkinase 3.90E-41 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g02278 - - csv:101223091 1558.5