Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g02318 ATGGCTGAGGTTCATAGTAGCAACACGGATGGAATTAAGCTTTTTGGCACTATGATTCATTTACAGACAAGAAAAATGAAGGAGGAACCGGAGAAAGGCGGCGGTGAAGGTGATGAAACAGAGATGAAGAGGCCAGAAAAAATTATTCCATGCCCAAGATGTAAGAGTATGGACACCAAATTCTGTTACTTCAACAATTACAATGTTAATCAGCCTAGACATTTCTGCAAGGGTTGCCAAAGGTACTGGACGGCCGGTGGGGCGCTCCGGAACGTACCCATCGGAGCTGGCCGCCGGAGAACCAAGCCGCCGCCTAATTGCCGGACCCTTTCCGGCGAGCTGCCAGAGGATTATGGGCAGCTTTACGATGCGGCTTCTGGGATTATTCATCAGCTTGAATTAGATGCGGTGGAAGGGTGGCGTCTCACGTTGGCGGAACAGGATTTTAGCTCGGTTTTTCCTTTCAAACGCCGGAAGATTATCGGTCAACACGGTCAAACGTCTTAA 507 49.11 MAEVHSSNTDGIKLFGTMIHLQTRKMKEEPEKGGGEGDETEMKRPEKIIPCPRCKSMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPIGAGRRRTKPPPNCRTLSGELPEDYGQLYDAASGIIHQLELDAVEGWRLTLAEQDFSSVFPFKRRKIIGQHGQTS 168
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 36975364 36975870 - ClCG01G023730.1 Cla01g02318 265907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g02318 168 MobiDBLite consensus disorder prediction 21 44 - -
Cla01g02318 168 ProSitePatterns Zinc finger Dof-type signature. 51 87 IPR003851 GO:0003677|GO:0006355
Cla01g02318 168 MobiDBLite consensus disorder prediction 22 44 - -
Cla01g02318 168 Pfam Dof domain, zinc finger 47 102 IPR003851 GO:0003677|GO:0006355
Cla01g02318 168 PANTHER CYCLIC DOF FACTOR 2 7 161 IPR045174 GO:0003700|GO:0006355
Cla01g02318 168 ProSiteProfiles Zinc finger Dof-type profile. 49 103 IPR003851 GO:0003677|GO:0006355
Cla01g02318 168 PANTHER DOF ZINC FINGER PROTEIN DOF1.5-LIKE 7 161 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla01g02318 Cla03g00724 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02318 Cla-Chr1:36975364 Cla10g01519 Cla-Chr10:30481283 9.50E-37 dispersed
Cla01g02318 Cla-Chr1:36975364 Cla03g00724 Cla-Chr3:8848676 2.15E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60527 PF02701 zf-Dof 1.60E-31 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g02318 - - csv:101215015 318.931