Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g02327 ATGTCAGAAATCCAACGGCTCATCATTGCCACGCTCATCTGCGGTCACAGCCAAGATGGAGAAATTATGGTCTTCACCACACAATGGATTTCCTCAGTCACAATCTCAGCCATTAAAAACACACACATCTCGAGATTTCCTGCTCTCGCTTTCGTTTTCCCTCCCCCTGCTTGTTTGGTCATGGAAGTTGTTAGAGTGGTTCCGTCGCTGTTCTTCCTCATCTGGGTGGTCTCTGCCTCAGACAGTCATTTGTCTCCCAAAGGAGTAAACTATGAAGTGGCGGCTTTGATATCAGTGAAGAGTAGGATAAGGGACGAGCGGGGAGTGATGCAAGGATGGGACATAAATTCGGTTGATCCATGCACCTGGAATATGGTTGCTTGCTCTGCTGAGAGCTTTGTGATTTCTCTTGAGATGCCAAATATGGGCTTATCTGGAACGCTTTCCCCTAGCATTGGGAACCTGAGTCATCTTCGGACAATGTTGTTGCAAAATAATGAGTTATCTGGTCCAATCCCAGATGATATAGGAGAACTTTCAGAGCTTCAGACTCTTGACCTTTCTAACAACCAGTTTGTAGGCGGGATTCCAAGTTCTTTGGGGTTTCTCACTCATTTAAATTACTTGAAGCTCAGTAGTAACAAGTTAAGTGGACCAATACCGGAATCTGTTGCAAATATCTCAGGCCTCTCCTTTCTAGATTTATCGAATAATAATCTCAGTGGTCCAACTCCAAGAATACTTGCCAAAGAGTACAGTGTTGCAGGGAATAGCTTCCTTTGTGCATCTTCATCATCTAAATTTTGTGGTGTACTTCCAAAGCCAGTTAACGAAACTGGTTCGTCCCAGAAATATAATGGCCGTCATCACATGGTTCTTTCCATAGCACTAATTGTCAGTTTCACATTTGTGCTTTCTGTTGTGTTACTTGTTGGCTGGGTGCATTGTTATAGATCTCATCTTGTCTTCACATCCTACGTGCAACAAGATTATGAATTTGATATAGGTCATCTGAAAAGGTTTACATTCCGTGAACTACAAAAGGCAACATGTAATTTTAGTCCCCAAAACATCCTGGGACAGGGTGGTTTTGGAGTAGTTTATAAAGGTTATCTTCCAAATGGGACATATGTTGCTGTCAAGAGACTGAAAGATCCGAATTACACTGGAGAAGTGCAGTTTCAAACTGAAGTTGAAATGATTGGCTTAGCAGTGCACCGCAATCTCTTGCGTCTGTATGGCTTTTGTATGACGCCAGATGAGAGATTGCTTGTTTATCCATATATGCCAAATGGGAGTGTTGCTGACCGTCTTAGAGATGCAGGCCAAGAGAAGCCTTCATTGAATTGGAACAGAAGATTGCGTATTGCCCTTGGTGCAGCTCGTGGACTCCTATACTTGCATGAGCAGTGTAACCCAAAAATTATTCACCGGGATGTGAAAGCTGCAAATATTCTTCTAGATGAAAGCTTTGAAGCCGTGGTTGGGGATTTCGGTCTGGCAAAGATGTTAGATAGGAGAGATTCACATGTTACTACTGCAGTTAGGGGCACAGTGGGACATATTGCCCCGGAATATCTTTCAACTGGACAATCTTCAGAAAAGACTGATGTTTTTGGATTTGGCATATTGGTTCTGGAACTCTTGACAGGGCAAAAAGCACTTGATGCTGGAAATGGTCAAATTCGAAAGGGAATGATCCTCGAATGGGTAAGTAGAGTTTCCTGTGATGAGTTGTTTGCTTATCATTTGGTTAGAACATTACATGAGGAAAAGAGGTTAGATGTGCTGGTGGACAGGGATCTTAAAGGATGTTTTGATGCAATGGAGCTGGAAAAAGCTGTAGAGTTGGCTCTGCAGTGTACTCAATCGCATCCACAACTTAGACCAAAGATGTCCGAGATCCTGAAGATTCTAGAAGGTCTCGTTGGACAGTCGAGTCAAATGGAGGAATCACCAGGTGGAGCAAGTCTTTATGAGGATAGAACTCACAGTTTCTCCAGAAATTACAGTGATATTCATGAAGAATCTTCATTTGTTGTTGAAGCCATGGAGCTTTCCGGACCTCGATGA 2073 42.98 MSEIQRLIIATLICGHSQDGEIMVFTTQWISSVTISAIKNTHISRFPALAFVFPPPACLVMEVVRVVPSLFFLIWVVSASDSHLSPKGVNYEVAALISVKSRIRDERGVMQGWDINSVDPCTWNMVACSAESFVISLEMPNMGLSGTLSPSIGNLSHLRTMLLQNNELSGPIPDDIGELSELQTLDLSNNQFVGGIPSSLGFLTHLNYLKLSSNKLSGPIPESVANISGLSFLDLSNNNLSGPTPRILAKEYSVAGNSFLCASSSSKFCGVLPKPVNETGSSQKYNGRHHMVLSIALIVSFTFVLSVVLLVGWVHCYRSHLVFTSYVQQDYEFDIGHLKRFTFRELQKATCNFSPQNILGQGGFGVVYKGYLPNGTYVAVKRLKDPNYTGEVQFQTEVEMIGLAVHRNLLRLYGFCMTPDERLLVYPYMPNGSVADRLRDAGQEKPSLNWNRRLRIALGAARGLLYLHEQCNPKIIHRDVKAANILLDESFEAVVGDFGLAKMLDRRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILVLELLTGQKALDAGNGQIRKGMILEWVSRVSCDELFAYHLVRTLHEEKRLDVLVDRDLKGCFDAMELEKAVELALQCTQSHPQLRPKMSEILKILEGLVGQSSQMEESPGGASLYEDRTHSFSRNYSDIHEESSFVVEAMELSGPR 690
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 37065220 37069793 + ClCG01G023820.1 Cla01g02327 265916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g02327 690 Pfam Leucine rich repeat N-terminal domain 90 129 IPR013210 -
Cla01g02327 690 Pfam Leucine Rich Repeat 182 203 IPR001611 GO:0005515
Cla01g02327 690 Pfam Protein kinase domain 356 637 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g02327 690 SMART serkin_6 353 638 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g02327 690 ProSitePatterns Serine/Threonine protein kinases active-site signature. 475 487 IPR008271 GO:0004672|GO:0006468
Cla01g02327 690 SUPERFAMILY Protein kinase-like (PK-like) 337 651 IPR011009 -
Cla01g02327 690 Gene3D Transferase(Phosphotransferase) domain 1 429 651 - -
Cla01g02327 690 SUPERFAMILY L domain-like 91 251 - -
Cla01g02327 690 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 70 690 - -
Cla01g02327 690 Gene3D Phosphorylase Kinase; domain 1 323 428 - -
Cla01g02327 690 ProSiteProfiles Protein kinase domain profile. 353 643 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g02327 690 Gene3D Ribonuclease Inhibitor 89 271 IPR032675 -
Cla01g02327 690 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 70 690 - -
Cla01g02327 690 ProSitePatterns Protein kinases ATP-binding region signature. 359 381 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01420 Cla-Chr1:28700111 Cla01g02327 Cla-Chr1:37065220 2.70E-112 dispersed
Cla01g02327 Cla-Chr1:37065220 Cla05g02357 Cla-Chr5:35159817 0 dispersed
Cla11g01583 Cla-Chr11:29526364 Cla01g02327 Cla-Chr1:37065220 8.02E-105 dispersed
Cla01g02327 Cla-Chr1:37065220 Cla11g00478 Cla-Chr11:5471599 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80307 PF00069 Pkinase 7.30E-44 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g02327 - - csv:101218118 1132.86