Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g02336 ATGATGTCCAAATCGTATACTAATCTTTTAGATTTAGCTTCCGGGAATTTTCCCATTATGGGCCGTGAGAAGAAGCGACTTCCACGAGTAATGACTGTTGCGGGGGTAATATCAGAGCTTGATGATGATCAGGCAAATAGTGTGACTTCTGAGGGACCTTCGTCAGTGGTGCAAGACCGAATAATTATTGTTGCTAATCAGCTTCCTATTAAAGCTAAGCGTAGACCCGACAATAAAGGCTGGAGTTTTAGTTGGGATGAAGACTCTTTGCTGTGGCAGCTCAAGGATGGTTTACCTGAAGATATGGAGGTTTTGTATGTAGGATCTTTGCGGGTGGATGTTGATTCTTCCGAACAAGATGATGTATCACAGCTTTTGTTGGAGAGGTTTAAGTGCGTTCCTGCCTTTTTGCCTCATGACATTTTATCAAAATTTTATCATGGTTTTTGTAAGCAGCAATTGTGGCCACTCTTCCATTATATGCTTCCGTTCTCAGCGACTCATGGTGGTCGGTTTGATCGCTCTCTGTGGGAGGCATATGTAGCAGCAAATAAAATTTTTTCTCAAAGGGTGATTGAGGTCATTAACCCAGATGATGATTTTGTATGGATTCATGATTACCATTTAATGGTGCTGCCCTCCTTCTTGAGGAGAAGGTTTACAAGATTGAGAATGGGCTTTTTTCTTCACAGTCCATTTCCTTCGTCAGAAATATATAGGACATTGCCAGTGAGGGAAGAGATTCTTAAGGCCCTTTTGAATGCAGACCTTATTGGCTTTCACACTTTCGACTATGCTCGACACTTCCTGTCTTGTTGTAGTCGGATGTTGGGTTTGGAATATCAGTCAAAGAGGGGTTATATTGGGTTGGAATATTTTGGAAGGACCGTGGGGATAAAGATCATGCCTGTTGGAATTCACATGGGCCAGATGGAGTCAGTGTTAAGACTTGCTGATAAAGACTGGAGGGTACAGGAGCTCAAAAGACAGTTTGAAGGAAAAGTTGTGTTACTTGGAGTTGATGACATGGACATTTTTAAAGGGGTCAATCTGAAGCTGTTGGCAATGGAACAAATGCTGAAGCAACATCCAAAGTGGCAGGGAAGAGCCGTTTTCATACAGATTGCAAACCCAGCTAGAGGGAGAGGGAAAGATCTCGAGGAAATACAAGATGAAATACAGGAATGCTGCAAGAGAATTAATGAAACTTTTGGGCAGCCAAATTACGAGCCGATTGTGTTCATTGATCGGCCTGTTTCTCTCACTGAAAGAGCAGCGTATTATACGGTTGCTGAATGTGTTGTAGTCACAGCGGTGAGGGATGGTATGAACCTAACTCCTTATGAGTACGTTGTCTGCAGGCAGGGAACCTCTGGATCAGATTATAGCACAGAAACAAATGGACCACATAAAAGCATGCTAGTCATATCAGAGTTCATGGGATGTTCCCCTTCTCTTAGTGGTGCAATTCGGGTTAACCCATGGAACATTGAAGCTACTGCTGAAGCATTGAATGAGGCAATATCAATGGCTGATGCTGAAAAGCAATTACGGCATGAAAAGCACTATAAATATGTGAGTACACATGATGTGGCATACTGGTCAAGGAGTTTTTTCCAAGATATGGAAAGAACTTGTAAGGATCACTTCAGAAGACGGTGCTGGGGAATTGGGTTGGGCTTTGGTTTCAGAGTTGTAGCCCTTGATCCTAACTTTAGAAAGTTGTCTATTGATGCCATTGTAGCTGCATATTCAAGGTCTAAAAGGAGGGCTATACTTTTGGATTATGATGGCACTGTCATGCCACAAACTTCAATTGATAAGACCCCAAGTCGTCAAGTTATTTCAATCATAGATTCACTTTGTGATGATATTAGGAATACTGTTTTTGTTGTCAGTGGAAGAGGACGTGAAAGTTTGGGCAATTGGTTTTCTTCTTGCGATAAACTTGGGATTGCTGCAGAGCATGGCTATTTTATGAGGTGGTCTGCTGATAAGGACTGGGAAAATTGTGGTCAAGGTAGTGATTTTGGCTGGATACAGATTGCAGAGCCAGTCATGAAATTATATACAGAAGCTACTGACGGGTCTTCCATTGAAACCAAGGAAAGTGCCTTGGTGTGGCACCACCAGGATGCGGACCCTGATTTTGGTTGCAGCCAGGCCAAGGAACTGTTGGATCACCTTGAAAGTGTGCTGGCAAATGAACCAGTTGCTGTGAAAAGTGGTCAGTTTATTGTAGAAGTGAAGCCACAGGGAGTCAGTAAAGGTTTGGTGGCAGAAAAGATCTTCACGTCAATGGCAGATGCAGGAAGACGGGCTGATTTTGTGCTATGCATTGGTGATGATAGATCTGATGAAGACATGTTTGAGATCATTGGTAATGCAGTGTCAAGTGGCGCCCTCTCGTCCAATACATTAGTTTTTGCCTGCACAGTTGGACAGAAACCAAGCAAGGCCAAGTATTACTTAGATGACACAACTGAGGTCATAAATATGCTTGAAGCCCTTGCAGAAGTTTCAGACATTTCTTCTCCTCCAGAATCCCCTTGA 2553 42.85 MMSKSYTNLLDLASGNFPIMGREKKRLPRVMTVAGVISELDDDQANSVTSEGPSSVVQDRIIIVANQLPIKAKRRPDNKGWSFSWDEDSLLWQLKDGLPEDMEVLYVGSLRVDVDSSEQDDVSQLLLERFKCVPAFLPHDILSKFYHGFCKQQLWPLFHYMLPFSATHGGRFDRSLWEAYVAANKIFSQRVIEVINPDDDFVWIHDYHLMVLPSFLRRRFTRLRMGFFLHSPFPSSEIYRTLPVREEILKALLNADLIGFHTFDYARHFLSCCSRMLGLEYQSKRGYIGLEYFGRTVGIKIMPVGIHMGQMESVLRLADKDWRVQELKRQFEGKVVLLGVDDMDIFKGVNLKLLAMEQMLKQHPKWQGRAVFIQIANPARGRGKDLEEIQDEIQECCKRINETFGQPNYEPIVFIDRPVSLTERAAYYTVAECVVVTAVRDGMNLTPYEYVVCRQGTSGSDYSTETNGPHKSMLVISEFMGCSPSLSGAIRVNPWNIEATAEALNEAISMADAEKQLRHEKHYKYVSTHDVAYWSRSFFQDMERTCKDHFRRRCWGIGLGFGFRVVALDPNFRKLSIDAIVAAYSRSKRRAILLDYDGTVMPQTSIDKTPSRQVISIIDSLCDDIRNTVFVVSGRGRESLGNWFSSCDKLGIAAEHGYFMRWSADKDWENCGQGSDFGWIQIAEPVMKLYTEATDGSSIETKESALVWHHQDADPDFGCSQAKELLDHLESVLANEPVAVKSGQFIVEVKPQGVSKGLVAEKIFTSMADAGRRADFVLCIGDDRSDEDMFEIIGNAVSSGALSSNTLVFACTVGQKPSKAKYYLDDTTEVINMLEALAEVSDISSPPESP 850
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 37151668 37157403 + ClCG01G023920.1 Cla01g02336 265925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g02336 850 Gene3D Glycogen Phosphorylase B; 321 528 - -
Cla01g02336 850 CDD GT20_TPS 60 543 IPR001830 GO:0003824|GO:0005992
Cla01g02336 850 CDD HAD_TPP 591 832 - -
Cla01g02336 850 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 1 842 IPR001830 GO:0003824|GO:0005992
Cla01g02336 850 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 592 798 IPR006379 -
Cla01g02336 850 Gene3D Glycogen Phosphorylase B; 50 320 - -
Cla01g02336 850 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 59 547 - -
Cla01g02336 850 TIGRFAM T6PP: trehalose-phosphatase 587 838 IPR003337 GO:0003824|GO:0005992
Cla01g02336 850 Pfam Trehalose-phosphatase 593 827 IPR003337 GO:0003824|GO:0005992
Cla01g02336 850 Pfam Glycosyltransferase family 20 60 543 IPR001830 GO:0003824|GO:0005992
Cla01g02336 850 Gene3D - 589 695 IPR023214 -
Cla01g02336 850 Gene3D - 719 845 IPR023214 -
Cla01g02336 850 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UDP-FORMING] 7-RELATED 1 842 - -
Cla01g02336 850 SUPERFAMILY HAD-like 590 838 IPR036412 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02336 Cla-Chr1:37151668 Cla05g02526 Cla-Chr5:36613469 0 dispersed
Cla10g00141 Cla-Chr10:1490923 Cla01g02336 Cla-Chr1:37151668 0 transposed
Cla01g02336 Cla-Chr1:37151668 Cla07g00244 Cla-Chr7:2689452 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g02336 K16055 - csv:101213082 1687.16