Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g02336 ATGATGTCCAAATCGTATACTAATCTTTTAGATTTAGCTTCCGGGAATTTTCCCATTATGGGCCGTGAGAAGAAGCGACTTCCACGAGTAATGACTGTTGCGGGGGTAATATCAGAGCTTGATGATGATCAGGCAAATAGTGTGACTTCTGAGGGACCTTCGTCAGTGGTGCAAGACCGAATAATTATTGTTGCTAATCAGCTTCCTATTAAAGCTAAGCGTAGACCCGACAATAAAGGCTGGAGTTTTAGTTGGGATGAAGACTCTTTGCTGTGGCAGCTCAAGGATGGTTTACCTGAAGATATGGAGGTTTTGTATGTAGGATCTTTGCGGGTGGATGTTGATTCTTCCGAACAAGATGATGTATCACAGCTTTTGTTGGAGAGGTTTAAGTGCGTTCCTGCCTTTTTGCCTCATGACATTTTATCAAAATTTTATCATGGTTTTTGTAAGCAGCAATTGTGGCCACTCTTCCATTATATGCTTCCGTTCTCAGCGACTCATGGTGGTCGGTTTGATCGCTCTCTGTGGGAGGCATATGTAGCAGCAAATAAAATTTTTTCTCAAAGGGTGATTGAGGTCATTAACCCAGATGATGATTTTGTATGGATTCATGATTACCATTTAATGGTGCTGCCCTCCTTCTTGAGGAGAAGGTTTACAAGATTGAGAATGGGCTTTTTTCTTCACAGTCCATTTCCTTCGTCAGAAATATATAGGACATTGCCAGTGAGGGAAGAGATTCTTAAGGCCCTTTTGAATGCAGACCTTATTGGCTTTCACACTTTCGACTATGCTCGACACTTCCTGTCTTGTTGTAGTCGGATGTTGGGTTTGGAATATCAGTCAAAGAGGGGTTATATTGGGTTGGAATATTTTGGAAGGACCGTGGGGATAAAGATCATGCCTGTTGGAATTCACATGGGCCAGATGGAGTCAGTGTTAAGACTTGCTGATAAAGACTGGAGGGTACAGGAGCTCAAAAGACAGTTTGAAGGAAAAGTTGTGTTACTTGGAGTTGATGACATGGACATTTTTAAAGGGGTCAATCTGAAGCTGTTGGCAATGGAACAAATGCTGAAGCAACATCCAAAGTGGCAGGGAAGAGCCGTTTTCATACAGATTGCAAACCCAGCTAGAGGGAGAGGGAAAGATCTCGAGGAAATACAAGATGAAATACAGGAATGCTGCAAGAGAATTAATGAAACTTTTGGGCAGCCAAATTACGAGCCGATTGTGTTCATTGATCGGCCTGTTTCTCTCACTGAAAGAGCAGCGTATTATACGGTTGCTGAATGTGTTGTAGTCACAGCGGTGAGGGATGGTATGAACCTAACTCCTTATGAGTACGTTGTCTGCAGGCAGGGAACCTCTGGATCAGATTATAGCACAGAAACAAATGGACCACATAAAAGCATGCTAGTCATATCAGAGTTCATGGGATGTTCCCCTTCTCTTAGTGGTGCAATTCGGGTTAACCCATGGAACATTGAAGCTACTGCTGAAGCATTGAATGAGGCAATATCAATGGCTGATGCTGAAAAGCAATTACGGCATGAAAAGCACTATAAATATGTGAGTACACATGATGTGGCATACTGGTCAAGGAGTTTTTTCCAAGATATGGAAAGAACTTGTAAGGATCACTTCAGAAGACGGTGCTGGGGAATTGGGTTGGGCTTTGGTTTCAGAGTTGTAGCCCTTGATCCTAACTTTAGAAAGTTGTCTATTGATGCCATTGTAGCTGCATATTCAAGGTCTAAAAGGAGGGCTATACTTTTGGATTATGATGGCACTGTCATGCCACAAACTTCAATTGATAAGACCCCAAGTCGTCAAGTTATTTCAATCATAGATTCACTTTGTGATGATATTAGGAATACTGTTTTTGTTGTCAGTGGAAGAGGACGTGAAAGTTTGGGCAATTGGTTTTCTTCTTGCGATAAACTTGGGATTGCTGCAGAGCATGGCTATTTTATGAGGTGGTCTGCTGATAAGGACTGGGAAAATTGTGGTCAAGGTAGTGATTTTGGCTGGATACAGATTGCAGAGCCAGTCATGAAATTATATACAGAAGCTACTGACGGGTCTTCCATTGAAACCAAGGAAAGTGCCTTGGTGTGGCACCACCAGGATGCGGACCCTGATTTTGGTTGCAGCCAGGCCAAGGAACTGTTGGATCACCTTGAAAGTGTGCTGGCAAATGAACCAGTTGCTGTGAAAAGTGGTCAGTTTATTGTAGAAGTGAAGCCACAGGGAGTCAGTAAAGGTTTGGTGGCAGAAAAGATCTTCACGTCAATGGCAGATGCAGGAAGACGGGCTGATTTTGTGCTATGCATTGGTGATGATAGATCTGATGAAGACATGTTTGAGATCATTGGTAATGCAGTGTCAAGTGGCGCCCTCTCGTCCAATACATTAGTTTTTGCCTGCACAGTTGGACAGAAACCAAGCAAGGCCAAGTATTACTTAGATGACACAACTGAGGTCATAAATATGCTTGAAGCCCTTGCAGAAGTTTCAGACATTTCTTCTCCTCCAGAATCCCCTTGA 2553 42.85 MMSKSYTNLLDLASGNFPIMGREKKRLPRVMTVAGVISELDDDQANSVTSEGPSSVVQDRIIIVANQLPIKAKRRPDNKGWSFSWDEDSLLWQLKDGLPEDMEVLYVGSLRVDVDSSEQDDVSQLLLERFKCVPAFLPHDILSKFYHGFCKQQLWPLFHYMLPFSATHGGRFDRSLWEAYVAANKIFSQRVIEVINPDDDFVWIHDYHLMVLPSFLRRRFTRLRMGFFLHSPFPSSEIYRTLPVREEILKALLNADLIGFHTFDYARHFLSCCSRMLGLEYQSKRGYIGLEYFGRTVGIKIMPVGIHMGQMESVLRLADKDWRVQELKRQFEGKVVLLGVDDMDIFKGVNLKLLAMEQMLKQHPKWQGRAVFIQIANPARGRGKDLEEIQDEIQECCKRINETFGQPNYEPIVFIDRPVSLTERAAYYTVAECVVVTAVRDGMNLTPYEYVVCRQGTSGSDYSTETNGPHKSMLVISEFMGCSPSLSGAIRVNPWNIEATAEALNEAISMADAEKQLRHEKHYKYVSTHDVAYWSRSFFQDMERTCKDHFRRRCWGIGLGFGFRVVALDPNFRKLSIDAIVAAYSRSKRRAILLDYDGTVMPQTSIDKTPSRQVISIIDSLCDDIRNTVFVVSGRGRESLGNWFSSCDKLGIAAEHGYFMRWSADKDWENCGQGSDFGWIQIAEPVMKLYTEATDGSSIETKESALVWHHQDADPDFGCSQAKELLDHLESVLANEPVAVKSGQFIVEVKPQGVSKGLVAEKIFTSMADAGRRADFVLCIGDDRSDEDMFEIIGNAVSSGALSSNTLVFACTVGQKPSKAKYYLDDTTEVINMLEALAEVSDISSPPESP 850
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 37151668 37157403 + ClCG01G023920.1 Cla01g02336 265925

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g02336 850 Gene3D Glycogen Phosphorylase B; 321 528 - -
Cla01g02336 850 CDD GT20_TPS 60 543 IPR001830 GO:0003824|GO:0005992
Cla01g02336 850 CDD HAD_TPP 591 832 - -
Cla01g02336 850 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 1 842 IPR001830 GO:0003824|GO:0005992
Cla01g02336 850 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 592 798 IPR006379 -
Cla01g02336 850 Gene3D Glycogen Phosphorylase B; 50 320 - -
Cla01g02336 850 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 59 547 - -
Cla01g02336 850 TIGRFAM T6PP: trehalose-phosphatase 587 838 IPR003337 GO:0003824|GO:0005992
Cla01g02336 850 Pfam Trehalose-phosphatase 593 827 IPR003337 GO:0003824|GO:0005992
Cla01g02336 850 Pfam Glycosyltransferase family 20 60 543 IPR001830 GO:0003824|GO:0005992
Cla01g02336 850 Gene3D - 589 695 IPR023214 -
Cla01g02336 850 Gene3D - 719 845 IPR023214 -
Cla01g02336 850 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UDP-FORMING] 7-RELATED 1 842 - -
Cla01g02336 850 SUPERFAMILY HAD-like 590 838 IPR036412 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g02336 K16055 TPS; trehalose 6-phosphate synthase/phosphatase [EC:2.4.1.15 3.1.3.12] - csv:101213082 1687.16
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02336 Cla-Chr1:37151668 Cla05g02526 Cla-Chr5:36613469 0 dispersed
Cla10g00141 Cla-Chr10:1490923 Cla01g02336 Cla-Chr1:37151668 0 transposed
Cla01g02336 Cla-Chr1:37151668 Cla07g00244 Cla-Chr7:2689452 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g251 . Blo11g00266 . . . . Bma14g00980 . . . Cma03g01336 Cma07g00170 Car03g01201 . . . Cpe10g00131 . . . . . . . Cla01g02336 Cam01g2449 Cec04g2098 Cco04g2173 Clacu01g2471 Cmu01g2336 Cre04g2005 Cone1ag0222 Cone5ag1644 . . Lsi01g00224 Csa06g03720 . Cme08g00207 Blo08g00611 . . Bda07g00964 . . Bma07g00825 . . Cmo03g01337 Cmo07g00166 . . . . Cpe19g01083 . . . . . . . . . . . . . . . . . Chy02g00214 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla01g00186 . 45 567 Trehalose Biosynthesis Gene Families AT4G24040 57.3 1.2e-178 623.6
Cla07g00244 . 1 872 Trehalose Biosynthesis Gene Families AT1G06410 75.1 0.0e+00 1359.0
Cla01g02336 . 1 845 Trehalose Biosynthesis Gene Families AT1G06410 75.6 0.0e+00 1355.5
Cla10g00141 . 1 844 Trehalose Biosynthesis Gene Families AT1G06410 66.4 0.0e+00 1152.1
Cla05g02526 . 1 841 Trehalose Biosynthesis Gene Families AT1G06410 62.7 0.0e+00 1090.5
Cla06g01651 . 1 837 Trehalose Biosynthesis Gene Families AT1G06410 59.7 2.7e-303 1038.1
Cla11g01682 . 85 716 Trehalose Biosynthesis Gene Families AT1G16980 64.3 1.2e-245 846.3
Cla03g00681 . 95 703 Trehalose Biosynthesis Gene Families AT1G16980 64.6 1.0e-241 833.2
Cla05g02526 . 1 841 Trehalose Biosynthesis Gene Families AT1G23870 75.5 0.0e+00 1341.3
Cla06g01651 . 1 852 Trehalose Biosynthesis Gene Families AT1G23870 66.4 0.0e+00 1210.7
Cla10g00141 . 1 843 Trehalose Biosynthesis Gene Families AT1G23870 62.5 0.0e+00 1107.0
Cla01g02336 . 1 846 Trehalose Biosynthesis Gene Families AT1G23870 61.4 0.0e+00 1105.9
Cla07g00244 . 1 873 Trehalose Biosynthesis Gene Families AT1G23870 58.6 0.0e+00 1080.1
Cla05g02526 . 1 846 Trehalose Biosynthesis Gene Families AT1G60140 73.2 0.0e+00 1308.9
Cla06g01651 . 1 855 Trehalose Biosynthesis Gene Families AT1G60140 68.3 0.0e+00 1233.8
Cla01g02336 . 1 850 Trehalose Biosynthesis Gene Families AT1G60140 60.8 0.0e+00 1085.5
Cla10g00141 . 1 848 Trehalose Biosynthesis Gene Families AT1G60140 60.0 0.0e+00 1078.9
Cla07g00244 . 1 876 Trehalose Biosynthesis Gene Families AT1G60140 58.0 6.3e-308 1053.5
Cla10g00141 . 1 847 Trehalose Biosynthesis Gene Families AT1G68020 72.0 0.0e+00 1272.7
Cla01g02336 . 1 846 Trehalose Biosynthesis Gene Families AT1G68020 64.5 0.0e+00 1168.3
Cla07g00244 . 1 875 Trehalose Biosynthesis Gene Families AT1G68020 60.9 0.0e+00 1125.2
Cla05g02526 . 1 840 Trehalose Biosynthesis Gene Families AT1G68020 63.6 0.0e+00 1110.9
Cla06g01651 . 1 835 Trehalose Biosynthesis Gene Families AT1G68020 62.7 0.0e+00 1094.3
Cla05g02526 . 1 841 Trehalose Biosynthesis Gene Families AT1G70290 68.8 0.0e+00 1186.4
Cla06g01651 . 1 852 Trehalose Biosynthesis Gene Families AT1G70290 63.3 0.0e+00 1102.4
Cla01g02336 . 1 849 Trehalose Biosynthesis Gene Families AT1G70290 57.2 1.4e-293 1005.7
Cla07g00244 . 1 882 Trehalose Biosynthesis Gene Families AT1G70290 55.8 7.6e-287 983.4
Cla10g00141 . 1 853 Trehalose Biosynthesis Gene Families AT1G70290 56.6 7.1e-285 976.9
Cla11g01682 . 1 962 Trehalose Biosynthesis Gene Families AT1G78580 76.3 0.0e+00 1458.4
Cla03g00681 . 10 939 Trehalose Biosynthesis Gene Families AT1G78580 73.4 0.0e+00 1365.1
Cla05g02526 . 33 841 Trehalose Biosynthesis Gene Families AT2G18700 61.0 2.4e-307 1051.6
Cla06g01651 . 10 837 Trehalose Biosynthesis Gene Families AT2G18700 60.4 3.3e-301 1031.2
Cla01g02336 . 1 842 Trehalose Biosynthesis Gene Families AT2G18700 59.0 1.1e-299 1026.2
Cla10g00141 . 1 844 Trehalose Biosynthesis Gene Families AT2G18700 58.6 2.0e-298 1021.9
Cla07g00244 . 24 872 Trehalose Biosynthesis Gene Families AT2G18700 56.3 8.0e-287 983.4
Cla10g00141 . 1 839 Trehalose Biosynthesis Gene Families AT4G17770 79.5 0.0e+00 1379.0
Cla01g02336 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 67.2 0.0e+00 1187.9
Cla07g00244 . 1 880 Trehalose Biosynthesis Gene Families AT4G17770 61.0 0.0e+00 1141.3
Cla05g02526 . 1 840 Trehalose Biosynthesis Gene Families AT4G17770 63.9 0.0e+00 1137.5
Cla06g01651 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 62.7 0.0e+00 1110.5
Cla11g01682 . 93 962 Trehalose Biosynthesis Gene Families AT4G27550 59.9 5.4e-298 1020.4
Cla03g00681 . 99 933 Trehalose Biosynthesis Gene Families AT4G27550 59.3 6.6e-288 986.9
Cla11g01682 . 1 962 Trehalose Biosynthesis Gene Families AT1G78580 76.3 0.0e+00 1458.4
Cla03g00681 . 10 939 Trehalose Biosynthesis Gene Families AT1G78580 73.4 0.0e+00 1365.1
Cla11g01682 . 85 716 Trehalose Biosynthesis Gene Families AT1G16980 64.3 1.2e-245 846.3
Cla03g00681 . 95 703 Trehalose Biosynthesis Gene Families AT1G16980 64.6 1.0e-241 833.2
Cla11g01682 . 83 641 Trehalose Biosynthesis Gene Families AT1G17000 60.1 1.7e-190 663.3
Cla03g00681 . 100 618 Trehalose Biosynthesis Gene Families AT1G17000 61.5 2.8e-190 662.5
Cla11g01682 . 93 962 Trehalose Biosynthesis Gene Families AT4G27550 59.9 5.4e-298 1020.4
Cla03g00681 . 99 933 Trehalose Biosynthesis Gene Families AT4G27550 59.3 6.6e-288 986.9
Cla10g00141 . 1 839 Trehalose Biosynthesis Gene Families AT4G17770 79.5 0.0e+00 1379.0
Cla01g02336 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 67.2 0.0e+00 1187.9
Cla07g00244 . 1 880 Trehalose Biosynthesis Gene Families AT4G17770 61.0 0.0e+00 1141.3
Cla05g02526 . 1 840 Trehalose Biosynthesis Gene Families AT4G17770 63.9 0.0e+00 1137.5
Cla06g01651 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 62.7 0.0e+00 1110.5
Cla10g00141 . 1 847 Trehalose Biosynthesis Gene Families AT1G68020 72.0 0.0e+00 1272.7
Cla01g02336 . 1 846 Trehalose Biosynthesis Gene Families AT1G68020 64.5 0.0e+00 1168.3
Cla07g00244 . 1 875 Trehalose Biosynthesis Gene Families AT1G68020 60.9 0.0e+00 1125.2
Cla05g02526 . 1 840 Trehalose Biosynthesis Gene Families AT1G68020 63.6 0.0e+00 1110.9
Cla06g01651 . 1 835 Trehalose Biosynthesis Gene Families AT1G68020 62.7 0.0e+00 1094.3
Cla07g00244 . 1 872 Trehalose Biosynthesis Gene Families AT1G06410 75.1 0.0e+00 1359.0
Cla01g02336 . 1 845 Trehalose Biosynthesis Gene Families AT1G06410 75.6 0.0e+00 1355.5
Cla10g00141 . 1 844 Trehalose Biosynthesis Gene Families AT1G06410 66.4 0.0e+00 1152.1
Cla05g02526 . 1 841 Trehalose Biosynthesis Gene Families AT1G06410 62.7 0.0e+00 1090.5
Cla06g01651 . 1 837 Trehalose Biosynthesis Gene Families AT1G06410 59.7 2.7e-303 1038.1
Cla05g02526 . 1 841 Trehalose Biosynthesis Gene Families AT1G70290 68.8 0.0e+00 1186.4
Cla06g01651 . 1 852 Trehalose Biosynthesis Gene Families AT1G70290 63.3 0.0e+00 1102.4
Cla01g02336 . 1 849 Trehalose Biosynthesis Gene Families AT1G70290 57.2 1.4e-293 1005.7
Cla07g00244 . 1 882 Trehalose Biosynthesis Gene Families AT1G70290 55.8 7.6e-287 983.4
Cla10g00141 . 1 853 Trehalose Biosynthesis Gene Families AT1G70290 56.6 7.1e-285 976.9
Cla05g02526 . 1 841 Trehalose Biosynthesis Gene Families AT1G23870 75.5 0.0e+00 1341.3
Cla06g01651 . 1 852 Trehalose Biosynthesis Gene Families AT1G23870 66.4 0.0e+00 1210.7
Cla10g00141 . 1 843 Trehalose Biosynthesis Gene Families AT1G23870 62.5 0.0e+00 1107.0
Cla01g02336 . 1 846 Trehalose Biosynthesis Gene Families AT1G23870 61.4 0.0e+00 1105.9
Cla07g00244 . 1 873 Trehalose Biosynthesis Gene Families AT1G23870 58.6 0.0e+00 1080.1
Cla05g02526 . 1 846 Trehalose Biosynthesis Gene Families AT1G60140 73.2 0.0e+00 1308.9
Cla06g01651 . 1 855 Trehalose Biosynthesis Gene Families AT1G60140 68.3 0.0e+00 1233.8
Cla01g02336 . 1 850 Trehalose Biosynthesis Gene Families AT1G60140 60.8 0.0e+00 1085.5
Cla10g00141 . 1 848 Trehalose Biosynthesis Gene Families AT1G60140 60.0 0.0e+00 1078.9
Cla07g00244 . 1 876 Trehalose Biosynthesis Gene Families AT1G60140 58.0 6.3e-308 1053.5
Cla05g02526 . 33 841 Trehalose Biosynthesis Gene Families AT2G18700 61.0 2.4e-307 1051.6
Cla06g01651 . 10 837 Trehalose Biosynthesis Gene Families AT2G18700 60.4 3.3e-301 1031.2
Cla01g02336 . 1 842 Trehalose Biosynthesis Gene Families AT2G18700 59.0 1.1e-299 1026.2
Cla10g00141 . 1 844 Trehalose Biosynthesis Gene Families AT2G18700 58.6 2.0e-298 1021.9
Cla07g00244 . 24 872 Trehalose Biosynthesis Gene Families AT2G18700 56.3 8.0e-287 983.4
Cla01g00186 . 45 567 Trehalose Biosynthesis Gene Families AT4G24040 57.3 1.2e-178 623.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001233 1 5 3 3 2 2 0 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 2 2 3 2 3 3 73