Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g02344 ATGGCTGAGATTTCAGGATCAAGCAATGGACATCACACTGTTTCTTTGAACGTCAAAGATGAATCCACAGCCGTCACCAGCAGAGAAGTAGCAGCTGACTGGCTCTCTGTACCTTTCATTCAAAAGTTGATCGCAGAGATTGTGGGGACATATTTCTTGATATTTGCTGGTGGGGCATCAGTGGTTGTGAATTTGAGCAAAGACAAAGTGATCACTTTCCCAGGGATTTCAATTGTTTGGGGTTTGGTTGTAATGGTGATGGTTTATTCTGTTGGTCATATCTCTGGTGCTCATTTCAACCCTGCTGTTACCATAGCCTTTGCCACTACCAAGAGATTTCCATGGAAACAGGTGCCAGCTTATGTGATAGCTCAAGTTCTTGGATCAACATTGGCAGCTGGGACACTTAGGTTAATATTTAATGGACACCAAGATCATTTCTCGGGGACCCTCCCAAGTGACTCATATTTGCAAACCTTTGTGATTGAATTCATCATCACATTTTACCTCATGTTTGTAGTGTCTGGTGTTGCCACTGATAATAGAGCTATTGGTGAACTTGCTGGACTCGCTGTTGGTGCTACTGTTCTTCTCAACGTGATGTTTGCAGGGCCAATTACAGGAGCATCCATGAATCCAGCCAGAAGCTTGGGACCTGCTATAGTATCAAGGCAGTTCAAAGGGTTGTGGATTTACATTGTAGCTCCCATTTCTGGGGCAATTTCAGGTGCTTTGGTTTACAATACCATCAGGTTCACAGACAAGCCTCTAAGAGAGATCACTAAAAGTGCCTCTTTCCTTAAAGGACAAAGTCGCAATGGTTCGTCTTGA 831 43.68 MAEISGSSNGHHTVSLNVKDESTAVTSREVAADWLSVPFIQKLIAEIVGTYFLIFAGGASVVVNLSKDKVITFPGISIVWGLVVMVMVYSVGHISGAHFNPAVTIAFATTKRFPWKQVPAYVIAQVLGSTLAAGTLRLIFNGHQDHFSGTLPSDSYLQTFVIEFIITFYLMFVVSGVATDNRAIGELAGLAVGATVLLNVMFAGPITGASMNPARSLGPAIVSRQFKGLWIYIVAPISGAISGALVYNTIRFTDKPLREITKSASFLKGQSRNGSS 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 37213383 37215162 + ClCG01G024020.1 Cla01g02344 265933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g02344 276 Pfam Major intrinsic protein 34 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla01g02344 276 ProSitePatterns MIP family signature. 98 106 IPR022357 -
Cla01g02344 276 Gene3D Glycerol uptake facilitator protein. 5 262 IPR023271 -
Cla01g02344 276 CDD MIP 41 250 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla01g02344 276 SUPERFAMILY Aquaporin-like 35 261 IPR023271 -
Cla01g02344 276 TIGRFAM MIP: MIP family channel proteins 45 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla01g02344 276 PANTHER AQUAPORIN NIP2-1 1 269 IPR034294 -
Cla01g02344 276 PRINTS Major intrinsic protein family signature 80 104 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla01g02344 276 PRINTS Major intrinsic protein family signature 230 250 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla01g02344 276 PRINTS Major intrinsic protein family signature 41 60 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla01g02344 276 PRINTS Major intrinsic protein family signature 162 180 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla01g02344 276 PRINTS Major intrinsic protein family signature 193 215 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla01g02344 276 PRINTS Major intrinsic protein family signature 117 136 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla01g02344 276 PANTHER AQUAPORIN NIP1-1-RELATED 1 269 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02344 Cla-Chr1:37213383 Cla05g01171 Cla-Chr5:12728940 1.77E-52 dispersed
Cla01g02344 Cla-Chr1:37213383 Cla10g01892 Cla-Chr10:34818950 3.51E-23 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g02344 K09874 - csv:101219297 506.908