Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla01g02344 | ATGGCTGAGATTTCAGGATCAAGCAATGGACATCACACTGTTTCTTTGAACGTCAAAGATGAATCCACAGCCGTCACCAGCAGAGAAGTAGCAGCTGACTGGCTCTCTGTACCTTTCATTCAAAAGTTGATCGCAGAGATTGTGGGGACATATTTCTTGATATTTGCTGGTGGGGCATCAGTGGTTGTGAATTTGAGCAAAGACAAAGTGATCACTTTCCCAGGGATTTCAATTGTTTGGGGTTTGGTTGTAATGGTGATGGTTTATTCTGTTGGTCATATCTCTGGTGCTCATTTCAACCCTGCTGTTACCATAGCCTTTGCCACTACCAAGAGATTTCCATGGAAACAGGTGCCAGCTTATGTGATAGCTCAAGTTCTTGGATCAACATTGGCAGCTGGGACACTTAGGTTAATATTTAATGGACACCAAGATCATTTCTCGGGGACCCTCCCAAGTGACTCATATTTGCAAACCTTTGTGATTGAATTCATCATCACATTTTACCTCATGTTTGTAGTGTCTGGTGTTGCCACTGATAATAGAGCTATTGGTGAACTTGCTGGACTCGCTGTTGGTGCTACTGTTCTTCTCAACGTGATGTTTGCAGGGCCAATTACAGGAGCATCCATGAATCCAGCCAGAAGCTTGGGACCTGCTATAGTATCAAGGCAGTTCAAAGGGTTGTGGATTTACATTGTAGCTCCCATTTCTGGGGCAATTTCAGGTGCTTTGGTTTACAATACCATCAGGTTCACAGACAAGCCTCTAAGAGAGATCACTAAAAGTGCCTCTTTCCTTAAAGGACAAAGTCGCAATGGTTCGTCTTGA | 831 | 43.68 | MAEISGSSNGHHTVSLNVKDESTAVTSREVAADWLSVPFIQKLIAEIVGTYFLIFAGGASVVVNLSKDKVITFPGISIVWGLVVMVMVYSVGHISGAHFNPAVTIAFATTKRFPWKQVPAYVIAQVLGSTLAAGTLRLIFNGHQDHFSGTLPSDSYLQTFVIEFIITFYLMFVVSGVATDNRAIGELAGLAVGATVLLNVMFAGPITGASMNPARSLGPAIVSRQFKGLWIYIVAPISGAISGALVYNTIRFTDKPLREITKSASFLKGQSRNGSS | 276 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 37213383 | 37215162 | + | ClCG01G024020.1 | Cla01g02344 | 265933 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla01g02344 | 276 | Pfam | Major intrinsic protein | 34 | 247 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cla01g02344 | 276 | ProSitePatterns | MIP family signature. | 98 | 106 | IPR022357 | - | |
Cla01g02344 | 276 | Gene3D | Glycerol uptake facilitator protein. | 5 | 262 | IPR023271 | - | |
Cla01g02344 | 276 | CDD | MIP | 41 | 250 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cla01g02344 | 276 | SUPERFAMILY | Aquaporin-like | 35 | 261 | IPR023271 | - | |
Cla01g02344 | 276 | TIGRFAM | MIP: MIP family channel proteins | 45 | 247 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cla01g02344 | 276 | PANTHER | AQUAPORIN NIP2-1 | 1 | 269 | IPR034294 | - | |
Cla01g02344 | 276 | PRINTS | Major intrinsic protein family signature | 80 | 104 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cla01g02344 | 276 | PRINTS | Major intrinsic protein family signature | 230 | 250 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cla01g02344 | 276 | PRINTS | Major intrinsic protein family signature | 41 | 60 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cla01g02344 | 276 | PRINTS | Major intrinsic protein family signature | 162 | 180 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cla01g02344 | 276 | PRINTS | Major intrinsic protein family signature | 193 | 215 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cla01g02344 | 276 | PRINTS | Major intrinsic protein family signature | 117 | 136 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cla01g02344 | 276 | PANTHER | AQUAPORIN NIP1-1-RELATED | 1 | 269 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla01g02344 | Cla-Chr1:37213383 | Cla05g01171 | Cla-Chr5:12728940 | 1.77E-52 | dispersed | |
Cla01g02344 | Cla-Chr1:37213383 | Cla10g01892 | Cla-Chr10:34818950 | 3.51E-23 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla01g02344 | K09874 | - | csv:101219297 | 506.908 |