Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g02349 ATGAAGAGTCCAGTGAGGTTTAAGTTGGGGAAACAGTCGTCCCTGGCGCCGGATGGGCATCTCGAAGATTTGGAGGAGCTAGTCAAGCAGGACCAAACTGAGGAGGGGATAGATTCGAGGGTGAGGTTGATGTACTTGGCCAATGAAGGTGATTTGGAAGGGATTAATGAACTGTTGGAATCGGGAGTCGATGTCAATTTCCATGATATCGACAACCGGACGGCTCTGCATATTGCTGCTTGCCAGGGATTCGCCGACGTTGTCGCTTTGTTGCTCGAACGTGGCGCTGAAGTTGACTCCAAAGATCGCTGGGGGAGCACGCCTCTTAGGGATGCTGTACATTACAAAAACCACGATGTGATCAAACTTCTGGAGAAGCATGGTGCAAAGCCTCCGGTGGCCCCCATGCTCGTCAAGAATGCCCGTGAAGTTCCAGATTATGAAATTGATCCTAAGGAACTTGATTTTACTAACAGTGTGAACATTACCAAGGGAACATTCCGCAAAGCATCTTGGCGTGGAACTGAGGTTGCTGTGAAAGAGCTTGGAGAAGATCTATTCACTGATGAGGATAAAGTGAGGGCTTTCAGAGATGAGCTTGCATTGCTTCAGAAAATACGACACCCCAATGTTGTCCAGTTTCTTGGTGCTGTTACTCAAAGTTGGCCGATGATGATCGTTACAGAATATTTACCAAAGGGAGATCTAGGAGCATTATTGAGTAGAAAAAGAGAAATAAAAACAATGACGGTTGTGAGACTTGCCCTTGATATTGCAAGGGGGATGAATTATTTGCATGAGAACAAGCCAACACCAATTATTCATCGTAATCTTGAGCCTTCAAATATTCTGAGGGATGATTCTGGCCACCTGAAAGTAGCAAATTTTGGAGTTAGCAAGTTATTGAAAGTTAAAGAAGATACACCTTCGACTCATTCAGAGACTTCACGAAGATATGAAGCTCCCGAGGTTTTCAAAAATGAAGAATATGACACAAAGGTGGATGTGTTTTCTTTTGCTTTGATTTTACAAGAGATGATTGAAGGCTGTCCTCCATTTCCTGACAAGGCAGATAGTGAAGTTCCTAAATTGTATGCAGCAGGAGAACGTCCCCCATTTAGAGCATCACTTAAACGTTATGCAAATGGACTAAAAGAGCTAATTGAAGAATGTTGGAATGAGAAGCCAAATAGTAGACCAACTTTTAGGCAGATAATAACCCAGCTGGAATTCATTTACAACAGATTCGGTCATAAGAGGCGCTGGAAGGTCAGGCCATTGAAATGCTTCCAGAATATTGAGGCAATGTTGAAGAGAGATCGTTCCCGTCGAAGCAGTTTCAATCTTTCGTCACATTCTTCTGCCAGCAGTATATGA 1377 43.72 MKSPVRFKLGKQSSLAPDGHLEDLEELVKQDQTEEGIDSRVRLMYLANEGDLEGINELLESGVDVNFHDIDNRTALHIAACQGFADVVALLLERGAEVDSKDRWGSTPLRDAVHYKNHDVIKLLEKHGAKPPVAPMLVKNAREVPDYEIDPKELDFTNSVNITKGTFRKASWRGTEVAVKELGEDLFTDEDKVRAFRDELALLQKIRHPNVVQFLGAVTQSWPMMIVTEYLPKGDLGALLSRKREIKTMTVVRLALDIARGMNYLHENKPTPIIHRNLEPSNILRDDSGHLKVANFGVSKLLKVKEDTPSTHSETSRRYEAPEVFKNEEYDTKVDVFSFALILQEMIEGCPPFPDKADSEVPKLYAAGERPPFRASLKRYANGLKELIEECWNEKPNSRPTFRQIITQLEFIYNRFGHKRRWKVRPLKCFQNIEAMLKRDRSRRSSFNLSSHSSASSI 458
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 37242729 37248289 + ClCG01G024070.2 Cla01g02349 265938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g02349 458 Gene3D Phosphorylase Kinase; domain 1 148 231 - -
Cla01g02349 458 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE ISOFORM X1 8 440 - -
Cla01g02349 458 CDD STKc_MAP3K-like 162 409 - -
Cla01g02349 458 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 8 440 - -
Cla01g02349 458 ProSiteProfiles Protein kinase domain profile. 121 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g02349 458 ProSiteProfiles Ankyrin repeat profile. 71 103 IPR002110 GO:0005515
Cla01g02349 458 Gene3D - 14 144 IPR036770 -
Cla01g02349 458 SUPERFAMILY Protein kinase-like (PK-like) 165 413 IPR011009 -
Cla01g02349 458 Gene3D Transferase(Phosphotransferase) domain 1 232 454 - -
Cla01g02349 458 Pfam Protein tyrosine and serine/threonine kinase 161 409 IPR001245 GO:0004672|GO:0006468
Cla01g02349 458 PIRSF ILK 2 432 - -
Cla01g02349 458 ProSiteProfiles Ankyrin repeat region circular profile. 71 103 - -
Cla01g02349 458 SMART ANK_2a 71 100 IPR002110 GO:0005515
Cla01g02349 458 SMART ANK_2a 104 133 IPR002110 GO:0005515
Cla01g02349 458 SMART ANK_2a 38 67 IPR002110 GO:0005515
Cla01g02349 458 Pfam Ankyrin repeats (3 copies) 43 131 IPR002110 GO:0005515
Cla01g02349 458 SUPERFAMILY Ankyrin repeat 19 132 IPR036770 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla01g02349 Cla03g00686 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02349 Cla-Chr1:37242729 Cla02g01793 Cla-Chr2:32950219 9.01E-139 dispersed
Cla03g00839 Cla-Chr3:11191629 Cla01g02349 Cla-Chr1:37242729 1.60E-14 transposed
Cla05g01754 Cla-Chr5:29374564 Cla01g02349 Cla-Chr1:37242729 1.13E-06 transposed
Cla09g01326 Cla-Chr9:21182462 Cla01g02349 Cla-Chr1:37242729 6.49E-139 transposed
Cla01g02349 Cla-Chr1:37242729 Cla02g01792 Cla-Chr2:32948878 8.06E-49 wgd
Cla01g02349 Cla-Chr1:37242729 Cla03g00686 Cla-Chr3:8320961 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80308 PF07714 PK_Tyr_Ser-Thr 1.20E-53 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g02349 - - csv:101215728 830.476