Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g02351 ATGTCAGACTCACCTCAGAGGAAGATGGGAAGAGGAAAGATTGAGATTAAGAGGATCGAAAATACAACAAATCGTCAAGTCACTTTCTGTAAGAGAAGAAATGGGTTGCTCAAAAAAGCGTATGAACTTTCTGTTCTATGTGATGCTGAAGTTGCTCTCATCGTTTTCTCAAGCCGTGGCCGCCTCTATGAGTATGCTAACAACAGATGGAAAGATAGGGCATATTATGGAATGGTTACTAGAAGGTTGAAAGGAGTAAGGGTTTTGCCAATCATAATGCATGATTCTGCCAGCATGTCTCAGACAGCCAATCACCAGCTCGACGAAATTAAGGTATCAGTTGCATCGGTAAAGGAAATCATGGATATTGTGAAGGCAACAATTGATAGGTACAAGAAGGCATCCTCAGATTCCACCAACACTGGATCTACTTCTGAAGCTAACACTCAGTTTTACCAACAAGAAGCTGCCAAACTCCGAGTTCAGATTGGTAACTTACAGAACTCAAACAGGAACATGTTGGGCGAGTCTTTAAGTTCTTTGAGTGTAAAAGATCTGAGAAGCCTGGAGAGCAAACTTGAGAAAGGAATTAGCAGAATTAGGTCCAAAAAGAATGAACTCCTCTTTGCTGAAATTGAGTATATGCGAAAAAGGGAAATTGATTTGCACAACAACAATCAGCTGCTTCGAGCAAAGATAGCTGAGAGTGAAAGAAATGTGAACATGATGGGAGGAGAATTTGAGCTGATGCAATCTCATCCATACGATCCAAGAGACTTCTTCCAAGTGAACGGCTTACAACATAATCATCAATATCCACGCCAAGACAACATGGCTCTTCAGTTAGTTTAA 852 40.85 MSDSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNRWKDRAYYGMVTRRLKGVRVLPIIMHDSASMSQTANHQLDEIKVSVASVKEIMDIVKATIDRYKKASSDSTNTGSTSEANTQFYQQEAAKLRVQIGNLQNSNRNMLGESLSSLSVKDLRSLESKLEKGISRIRSKKNELLFAEIEYMRKREIDLHNNNQLLRAKIAESERNVNMMGGEFELMQSHPYDPRDFFQVNGLQHNHQYPRQDNMALQLV 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 37256979 37263494 + ClCG01G024100.1 Cla01g02351 265940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g02351 283 SMART madsneu2 9 68 IPR002100 GO:0003677|GO:0046983
Cla01g02351 283 ProSiteProfiles K-box domain profile. 149 239 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cla01g02351 283 Coils Coil 186 206 - -
Cla01g02351 283 SUPERFAMILY SRF-like 10 72 IPR036879 GO:0003677|GO:0046983
Cla01g02351 283 PRINTS MADS domain signature 31 46 IPR002100 GO:0003677|GO:0046983
Cla01g02351 283 PRINTS MADS domain signature 46 67 IPR002100 GO:0003677|GO:0046983
Cla01g02351 283 PRINTS MADS domain signature 11 31 IPR002100 GO:0003677|GO:0046983
Cla01g02351 283 ProSiteProfiles MADS-box domain profile. 9 69 IPR002100 GO:0003677|GO:0046983
Cla01g02351 283 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 18 65 IPR002100 GO:0003677|GO:0046983
Cla01g02351 283 Gene3D - 21 81 IPR036879 GO:0003677|GO:0046983
Cla01g02351 283 PANTHER FLORAL HOMEOTIC PROTEIN AGAMOUS-LIKE 9 272 - -
Cla01g02351 283 PANTHER SERUM RESPONSE FACTOR HOMOLOG 9 272 - -
Cla01g02351 283 ProSitePatterns MADS-box domain signature. 11 65 IPR002100 GO:0003677|GO:0046983
Cla01g02351 283 Pfam K-box region 145 233 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cla01g02351 283 CDD MADS_MEF2_like 10 68 IPR033896 GO:0000977|GO:0045944
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla01g02351 Cla03g00684 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02351 Cla-Chr1:37256979 Cla08g00042 Cla-Chr8:1179583 2.16E-63 dispersed
Cla07g00897 Cla-Chr7:24703483 Cla01g02351 Cla-Chr1:37256979 5.39E-26 dispersed
Cla01g02351 Cla-Chr1:37256979 Cla02g01796 Cla-Chr2:32977982 2.50E-76 wgd
Cla01g02351 Cla-Chr1:37256979 Cla03g00684 Cla-Chr3:8285530 9.60E-89 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60532 PF01486 K-box 3.80E-28 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g02351 K09264 - csv:101221430 394.045