Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g02375 ATGGCGCGTGAAATGGTTTCTGGGTCCCAACAAAAAGCTTCTCTCTTCCTGATTAACTCCCATTTGAGCTCTCACTTTCTCCATTTGACTTCGAATTCATCCCTAAATATCATTGCCCTGCCTCCGTTTCATTCTGACGCCTTCTGTTTCTGCAAAACTATTGGACTCAAGGCTGCTGGTTGCATCTTGTCCTCAGAGGTCAACCATCGCTATATCTCAATGGAGAAAGAGCCTCTTCTTCCATATCTTAGCCCAAGAGGGAAACCGCCTCCTCCACTTCCTCAATTATGTCCACTCCCTGAAAACGATGAAATTACTCTGCCTATGACCCCCACGGAGCTCAAAGACCGCTTGATCTTTGGTCCTTCGTCGTCCCCACAAGACGCTTCTCCTATATTCGATGCTTTAACGCTAACTCTTTCCTCTTCCAGACCCTCTGCTTCATCTTCTCTTCAGGACCCGTCTACGCCTTTGGACCCAAAATCACAATCGCAGTCTCAACAAGCGTGGCTCGTGGATTCCAATTACACATGGCCCAAGAGCAACCTCCACCGCTCCAAAACCGCGCCTGCCATGGCGGTCATCAACGATGTCAATCATTCGCAGGAGCCCAAGCCACAATTTGGTAAACAATCTATCATCCGCCAAGCTGTTGTTCTTCTAATTATATACTTATCATTGGGCGTGGTTATCTATTGGATTAATCGTGATAAGTTTACGGCTCACGAGACTCATCCTGTGGTCGATGCATTGTACTTTTGCATTGTAACGATGTGTACTATTGGGTATGGAGATATTACCCCCAATAGTGCGGCGACGAAGCTGTTCTCAGTGTTGTTTGTGTTGGTGGGATTTGGGTTTATTGATATATTGCTCTCTGGAATGGTCAGTTATGTGCTTGATTTGCAGGAGAGTTATTTGTTAAGGAATGTAAAGAGGGGGGTGCAGCGTCAATCTGGGAAATCTTATATAATTGATGTGAAGAAGGGAAGAATGAGGATTAGAATGAAAGTGGCATTGGCCCTTGGTGTTGTGATACTTTGTATAGGAGTTGGCATGGGTGTTATGCATTTTGTTGAGAATCTGGGGTGGTTGGATTCATTTTATCTTTCAGTTATGTCTGTCACGACAGTTGGATATGGTGATCAGGCATTCAAGTCAATGACTGGTCGTATTTTTGCTTCTATCTGGTTGCTTGTATCAACCCTTGCTGTAGCTCGGGCGTTTCTTTATTTAGCAGAGGCAAGAGTAGATAAGCGGCACAGGATGATGGCAAAATGGATACTTGGTCAGGATATGACTGTTTCTGAGTTTCTTGCTGCTGATATTGACAACAATGGTTTTGTGAGGCACTAG 1356 44.84 MAREMVSGSQQKASLFLINSHLSSHFLHLTSNSSLNIIALPPFHSDAFCFCKTIGLKAAGCILSSEVNHRYISMEKEPLLPYLSPRGKPPPPLPQLCPLPENDEITLPMTPTELKDRLIFGPSSSPQDASPIFDALTLTLSSSRPSASSSLQDPSTPLDPKSQSQSQQAWLVDSNYTWPKSNLHRSKTAPAMAVINDVNHSQEPKPQFGKQSIIRQAVVLLIIYLSLGVVIYWINRDKFTAHETHPVVDALYFCIVTMCTIGYGDITPNSAATKLFSVLFVLVGFGFIDILLSGMVSYVLDLQESYLLRNVKRGVQRQSGKSYIIDVKKGRMRIRMKVALALGVVILCIGVGMGVMHFVENLGWLDSFYLSVMSVTTVGYGDQAFKSMTGRIFASIWLLVSTLAVARAFLYLAEARVDKRHRMMAKWILGQDMTVSEFLAADIDNNGFVRH 451
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 37446543 37452438 + ClCG01G024330.1 Cla01g02375 265964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g02375 451 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 163 450 IPR003280 GO:0005267|GO:0016020|GO:0071805
Cla01g02375 451 MobiDBLite consensus disorder prediction 144 166 - -
Cla01g02375 451 PRINTS Two pore domain K+ channel signature 376 385 IPR003280 GO:0005267|GO:0016020|GO:0071805
Cla01g02375 451 PRINTS Two pore domain K+ channel signature 256 284 IPR003280 GO:0005267|GO:0016020|GO:0071805
Cla01g02375 451 SUPERFAMILY Voltage-gated potassium channels 213 299 - -
Cla01g02375 451 Gene3D - 210 310 - -
Cla01g02375 451 Pfam Ion channel 220 299 IPR013099 -
Cla01g02375 451 Pfam Ion channel 344 413 IPR013099 -
Cla01g02375 451 SUPERFAMILY Voltage-gated potassium channels 328 432 - -
Cla01g02375 451 Gene3D - 323 429 - -
Cla01g02375 451 PANTHER TWO-PORE POTASSIUM CHANNEL 3 163 450 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02375 Cla-Chr1:37446543 Cla09g02066 Cla-Chr9:38236836 5.30E-51 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g02375 K05389 - csv:101220017 669.848