Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla01g02377 | ATGTCAGATGAAATGTTTAAAGATCTTTTTTATGGCGGGATGGATGAGTACGAGTCTCTAGTGAGAGCTTTTGGGGAATCATCGGATTATTCGAATAATAATAATGAAATTTCGGGGACTCCCATAAATTCTTGTGGATCTTTGTCGTCTTCGGATGCTGGAGCTGAGGAGGATGATTCTGTGAAAGACAAGGATAAGCAGATCGACAAAGAACATGTTGAAGATGGAGGAGAGAGTTCTAAGGCTGGATCAGGTAAATCAAAGAAGAAAGGAGAGAAGAAAGAGAGAGAAGCGAGAGTTGCTTTCATGACGAAGAGCGAGGTTGATCATCTTGAAGATGGATATAGATGGAGAAAATATGGACAGAAGGCTGTTAAGAACAGTGCTTATCCTAGGAGCTATTACAGATGTACAACTCAAAAATGCGGAGTGAAAAAACGAGTAGAGAGATCCTTTGAAGATCCATCCATTGTAATTACAACCTACGAAGGTCAACACAACCACCCAGTCCCGACAACGCTAAGAGGAAACCTATCGGCGGCGAGCAGCGCGTTCTCGCCATCCATGCTAGCACCAATGCCAGTGGTCGGTGGTATTGGGTTTCTACCTACAGAGTTGTTGAGTAATTCTTCCAGCAACAATAACCAGGCCATCAATGGTGGCGCATCCGTTTATTCACATAACAACTTTGACTACACTTATAATGAGCGACAATCAGAATATGGGCTTCTACAGGATATTTTTCCAACTCCTTCATCGTTCTTCAACCGGCAATTGTGA | 780 | 42.82 | MSDEMFKDLFYGGMDEYESLVRAFGESSDYSNNNNEISGTPINSCGSLSSSDAGAEEDDSVKDKDKQIDKEHVEDGGESSKAGSGKSKKKGEKKEREARVAFMTKSEVDHLEDGYRWRKYGQKAVKNSAYPRSYYRCTTQKCGVKKRVERSFEDPSIVITTYEGQHNHPVPTTLRGNLSAASSAFSPSMLAPMPVVGGIGFLPTELLSNSSSNNNQAINGGASVYSHNNFDYTYNERQSEYGLLQDIFPTPSSFFNRQL | 259 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 37466720 | 37468275 | + | ClCG01G024340.1 | Cla01g02377 | 265966 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla01g02377 | 259 | MobiDBLite | consensus disorder prediction | 27 | 98 | - | - | |
Cla01g02377 | 259 | ProSiteProfiles | WRKY domain profile. | 106 | 171 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cla01g02377 | 259 | PANTHER | WRKY TRANSCRIPTION FACTOR 28-RELATED | 29 | 250 | - | - | |
Cla01g02377 | 259 | SUPERFAMILY | WRKY DNA-binding domain | 103 | 171 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cla01g02377 | 259 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 29 | 250 | IPR044810 | GO:0003700 | |
Cla01g02377 | 259 | Pfam | WRKY DNA -binding domain | 112 | 169 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cla01g02377 | 259 | Gene3D | WRKY domain | 95 | 172 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cla01g02377 | 259 | SMART | WRKY_cls | 111 | 170 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cla01g02377 | 259 | MobiDBLite | consensus disorder prediction | 27 | 54 | - | - | |
Cla01g02377 | 259 | MobiDBLite | consensus disorder prediction | 55 | 98 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla01g02377 | Cla-Chr1:37466720 | Cla09g02191 | Cla-Chr9:39506007 | 8.49E-59 | dispersed | |
Cla01g02377 | Cla-Chr1:37466720 | Cla02g01802 | Cla-Chr2:33057673 | 3.36E-43 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
60533 | PF03106 | WRKY | 8.00E-26 | CL0274 | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla01g02377 | - | - | cmo:103484390 | 396.741 |