Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g02377 ATGTCAGATGAAATGTTTAAAGATCTTTTTTATGGCGGGATGGATGAGTACGAGTCTCTAGTGAGAGCTTTTGGGGAATCATCGGATTATTCGAATAATAATAATGAAATTTCGGGGACTCCCATAAATTCTTGTGGATCTTTGTCGTCTTCGGATGCTGGAGCTGAGGAGGATGATTCTGTGAAAGACAAGGATAAGCAGATCGACAAAGAACATGTTGAAGATGGAGGAGAGAGTTCTAAGGCTGGATCAGGTAAATCAAAGAAGAAAGGAGAGAAGAAAGAGAGAGAAGCGAGAGTTGCTTTCATGACGAAGAGCGAGGTTGATCATCTTGAAGATGGATATAGATGGAGAAAATATGGACAGAAGGCTGTTAAGAACAGTGCTTATCCTAGGAGCTATTACAGATGTACAACTCAAAAATGCGGAGTGAAAAAACGAGTAGAGAGATCCTTTGAAGATCCATCCATTGTAATTACAACCTACGAAGGTCAACACAACCACCCAGTCCCGACAACGCTAAGAGGAAACCTATCGGCGGCGAGCAGCGCGTTCTCGCCATCCATGCTAGCACCAATGCCAGTGGTCGGTGGTATTGGGTTTCTACCTACAGAGTTGTTGAGTAATTCTTCCAGCAACAATAACCAGGCCATCAATGGTGGCGCATCCGTTTATTCACATAACAACTTTGACTACACTTATAATGAGCGACAATCAGAATATGGGCTTCTACAGGATATTTTTCCAACTCCTTCATCGTTCTTCAACCGGCAATTGTGA 780 42.82 MSDEMFKDLFYGGMDEYESLVRAFGESSDYSNNNNEISGTPINSCGSLSSSDAGAEEDDSVKDKDKQIDKEHVEDGGESSKAGSGKSKKKGEKKEREARVAFMTKSEVDHLEDGYRWRKYGQKAVKNSAYPRSYYRCTTQKCGVKKRVERSFEDPSIVITTYEGQHNHPVPTTLRGNLSAASSAFSPSMLAPMPVVGGIGFLPTELLSNSSSNNNQAINGGASVYSHNNFDYTYNERQSEYGLLQDIFPTPSSFFNRQL 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 37466720 37468275 + ClCG01G024340.1 Cla01g02377 265966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g02377 259 MobiDBLite consensus disorder prediction 27 98 - -
Cla01g02377 259 ProSiteProfiles WRKY domain profile. 106 171 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla01g02377 259 PANTHER WRKY TRANSCRIPTION FACTOR 28-RELATED 29 250 - -
Cla01g02377 259 SUPERFAMILY WRKY DNA-binding domain 103 171 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cla01g02377 259 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 29 250 IPR044810 GO:0003700
Cla01g02377 259 Pfam WRKY DNA -binding domain 112 169 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla01g02377 259 Gene3D WRKY domain 95 172 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cla01g02377 259 SMART WRKY_cls 111 170 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla01g02377 259 MobiDBLite consensus disorder prediction 27 54 - -
Cla01g02377 259 MobiDBLite consensus disorder prediction 55 98 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02377 Cla-Chr1:37466720 Cla09g02191 Cla-Chr9:39506007 8.49E-59 dispersed
Cla01g02377 Cla-Chr1:37466720 Cla02g01802 Cla-Chr2:33057673 3.36E-43 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60533 PF03106 WRKY 8.00E-26 CL0274 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g02377 - - cmo:103484390 396.741