Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g02379 ATGGCTGCTTCTACAATGGCTCTCTCCTCCCCATCTCTGGCCGGCAAGGCCGTGAAGCTCTCCCCCAACACCCCTGAAATTCAGGGCAATGGAAGAGTCAGCATGAGGAAAACTGTCACCAAGCAAGTTTCCTCCGGCAGCCCATGGTACGGCCCCGACCGTGTCAAGTACTTGGGCCCATTCTCCGGCGAGCCACCGTCCTACTTGACTGGAGAGTTCCCTGGTGACTACGGCTGGGACACTGCTGGACTTTCAGCCGACCCCGAGACCTTCGCCAAGAACCGTGAGCTCGAAGTGATCCACTCCAGATGGGCCATGCTTGGAGCTTTGGGCTGTGTCTTCCCTGAGCTTCTATCTCGCAATGGCGTGAAGTTTGGTGAAGCTGTGTGGTTCAAGGCTGGATCTCAAATCTTCAGCGAGGGAGGGCTCGACTACTTGGGGAATCCCAGCTTGATCCACGCACAGAGCATTTTGGCCATCTGGGCCACTCAGGTTGTGTTGATGGGCGCCGTCGAGGGCTACCGCATTGCCGGCGGCCCGCTCGGGGAGGTGACTGACCCCATCTACCCAGGTGGAAGCTTCGACCCATTGGGTCTGGCTGATGACCCAGAGGCCTTCGCTGAATTGAAGGTTAAGGAGCTCAAGAATGGAAGGTTGGCCATGTTCTCCATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGTCCATTGGAGAATTTGGCTGACCACCTTGCTGATCCAGTCAACAACAATGCCTGGGCCTATGCCACAAACTTTGTTCCTGGAAAGTGA 798 55.76 MAASTMALSSPSLAGKAVKLSPNTPEIQGNGRVSMRKTVTKQVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 37491657 37492454 - ClCG01G024370.1 Cla01g02379 265968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g02379 265 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 265 IPR001344 GO:0009765|GO:0016020
Cla01g02379 265 Gene3D Chlorophyll a/b binding protein domain 56 258 - -
Cla01g02379 265 SUPERFAMILY Chlorophyll a-b binding protein 48 262 - -
Cla01g02379 265 MobiDBLite consensus disorder prediction 1 30 - -
Cla01g02379 265 PANTHER CHLOROPHYLL A-B BINDING PROTEIN 3, CHLOROPLASTIC 1 265 - -
Cla01g02379 265 Pfam Chlorophyll A-B binding protein 65 231 IPR022796 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02379 Cla-Chr1:37491657 Cla08g00194 Cla-Chr8:3955913 4.71E-66 dispersed
Cla01g02379 Cla-Chr1:37491657 Cla01g02380 Cla-Chr1:37494120 0 tandem
Cla02g00280 Cla-Chr2:2756166 Cla01g02379 Cla-Chr1:37491657 7.42E-152 transposed
Cla10g00607 Cla-Chr10:9031527 Cla01g02379 Cla-Chr1:37491657 1.11E-121 transposed
Cla10g01121 Cla-Chr10:25634840 Cla01g02379 Cla-Chr1:37491657 2.17E-173 transposed
Cla11g01861 Cla-Chr11:32115231 Cla01g02379 Cla-Chr1:37491657 2.69E-60 transposed
Cla01g02379 Cla-Chr1:37491657 Cla02g01804 Cla-Chr2:33078485 0 wgd
Cla01g02379 Cla-Chr1:37491657 Cla03g00652 Cla-Chr3:7885643 1.74E-96 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g02379 K08912 - cpap:110819729 528.48