Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g02380 ATGATTTCCCTGGATAAGGACCCTTCTCCCAAATCCAAGTATATTATGCTCATCATTCCTCTTCGTCAAATTCATCCACCAGCCTCTCCACTTCATTTCATACCCATTTCAAATTCTTTCTGGATCATTCCAATGGCTGCCTCTACAATGGCTCTCTCCTCCCCATCTCTGGCCGGCAAGGCCGTGAAGCTCTCCCCCAACGCCCCTGAAATTCAGGGCAATGGAAGAGTCAGCATGAGGAAGACGGCCAGCAAGCAAGTTTCCTCCGGCAGCCCATGGTACGGCCCCGACCGTGTCAAGTACTTGGGCCCATTCTCCGGCGAGCCACCGTCCTACTTGACCGGAGAGTTCCCCGGTGACTACGGCTGGGACACTGCTGGACTTTCAGCCGATCCCGAGACCTTCGCCAAGAACCGTGAGCTCGAAGTGATCCACTCCAGATGGGCCATGCTTGGAGCTTTGGGCTGTGTCTTCCCTGAGCTTCTATCTCGCAATGGCGTGAAGTTTGGTGAAGCTGTGTGGTTCAAGGCTGGATCTCAAATCTTCAGCGAGGGAGGGCTCGACTACTTGGGGAATCCCAGCTTGATCCACGCACAGAGCATTTTGGCCATCTGGGCCACTCAGGTTGTGTTGATGGGCGCCGTCGAGGGCTACCGCATTGCCGGCGGCCCGCTCGGGGAGGTGACTGACCCCATCTACCCAGGTGGAAGCTTCGACCCATTGGGTCTGGCTGATGACCCAGAGGCCTTCGCTGAATTGAAGGTTAAGGAGCTCAAGAATGGAAGGTTGGCCATGTTCTCCATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAAGGTCCATTGGAGAATTTGGCTGACCACCTTTCTGACCCAGTCAACAACAATGCTTGGGCTTATGCCACAAACTTTGTTCCCGGAAAGTGA 930 53.98 MISLDKDPSPKSKYIMLIIPLRQIHPPASPLHFIPISNSFWIIPMAASTMALSSPSLAGKAVKLSPNAPEIQGNGRVSMRKTASKQVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNNAWAYATNFVPGK 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 37494120 37496291 + ClCG01G024380.2 Cla01g02380 265969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g02380 309 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 45 309 IPR001344 GO:0009765|GO:0016020
Cla01g02380 309 MobiDBLite consensus disorder prediction 69 90 - -
Cla01g02380 309 PANTHER CHLOROPHYLL A-B BINDING PROTEIN 3, CHLOROPLASTIC 45 309 - -
Cla01g02380 309 Pfam Chlorophyll A-B binding protein 109 275 IPR022796 -
Cla01g02380 309 Gene3D Chlorophyll a/b binding protein domain 100 302 - -
Cla01g02380 309 SUPERFAMILY Chlorophyll a-b binding protein 92 306 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02380 Cla-Chr1:37494120 Cla02g01804 Cla-Chr2:33078485 0 dispersed
Cla01g02379 Cla-Chr1:37491657 Cla01g02380 Cla-Chr1:37494120 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g02380 K08912 - cpap:110819729 531.561