Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g02381 ATGGCTTCTAGCGTCAGTTTAGCCATTTTCATGATAGCTAGTTTTGTTCTAGTAAGGGTTCTGTCTACCCAACACCAATCCGCCATGGAAGTTGAATTGGAAGCCTTGAAGGCCTTCAAGAGTTGCATCCAGTTCGATCCATTGGGAGCACTTGCAGATTGGACGGACCTTAATCCCCACTGCAATTGGTCTGGCATTATATGTGACCCTGATTCCAAAAGGGTAATTTCGATTACTTTGATTGATCAGCAGCTTGAAGGCGAGATTTCTCCATTTATTGGGAACCTCTCAGCTCTCCAGGTTCTCGATTTAACTCAGAATTCGTTTACCGGGCAGATTCCAGGTGAATTGGGTTCGTGTTCCAACCTTTCTCAGCTCACTCTTTACAGAAACTTTCTTTCAGGTCACATTCCACTCCAGTTGGGAAACCTTGGGTTCCTGCAAGATGTTGATTTGGGAAATAACTTCTTAAAGGGAAGCATTCCTGATAGCATTTGCAATTGCACAAACTTGTTAGCATTTGGTGTAATATTTAATAATCTCACGGGAAGAATCCCATCAAACATAGGAAACTTAGTCGATCTTCAAATTCTGGTTGCATACGCCAACAAGCTTGAAGGTTCCATTCCCATCTCTATTGGCAAACTAGGTGCGCTGCAAACTCTAGATCTTAGCCAGAACAACTTGTCTGGGAATATACCAATGGAGATTGGGAATTTGTTGAATTTGGAGTATATTTCATTGTTTGAGAATGCTTTGGCTGGGAAAATTCCTGAGGAGATAGGTAAATGTGAGAAGCTTCTTTCTTTGGAACTATACAACAATAAGTTCAGTGGTCCAATTCCTTCACAATTAGGCTCTCTGATTCACTTACAAACCTTGCGTCTGTATACAAATAGATTAAATTCCACTATACCACAATCTCTCTTACAGTTGAAAGGTTTAACCCATTTGCTTCTCTCAGAGAACGAGTTAAGTGGAACTGTATCTTCTGATATTGGATCTTTGAGATCATTGCAGGTTTTGACTCTTCACTCGAATAGTTTTTTCGGGGTGATTCCTTTGTCTTTGACAAACTTGTCAAACCTCACACATTTGTCTCTGAGCTTCAATTTTTTCACTGGTGAGATTCCGTCCAATTTAGGTCTGCTTTATAATCTGAAGAGATTGACATTGAGCAGCAATTTCCTAGAAGGTTCAATTCCATCTAGTATTATCAATTGCACCCAGCTTTCTATAATTGATCTTTCATTCAATAGGCTGACAGGAAAAATACCTATGGGATACGGGAAGTTGCAGAATCTTACTTCCCTCTTGCTTGGATCAAATAGAATTTTTGGTGAAATCCCAGATGACTTATTTAATTGCTCATCCCTTGAGGTTGTAGACCTGGCTCTAAACAATTTCACTGGATTATTAAAATCCAGTATCGGCAAGCTTTCCAATATTCGAGTTTTCAGAGCCGCATCAAATTCATTTTCTGGGGAAATTCCAGGTGACATTGGCAACTTAAGCAGGCTCAACACTTTAGTACTTGCAGAAAATAAATTTTCAGGTCAAATTCCTGGGGAGTTGTCTAAGCTTTCTCTTCTTCAAGCTCTTTCTTTGCATGACAATGCATTGGAAGGAAGGATTCCTGAAAAAATATTTGATCTGAAACAACTGGTTCATCTTCATCTGCAGAACAACAAGTTCATAGGTCCAATTCCAGATGTCATCTCAAGACTAGAGTTTCTTTCGTATTTGGACCTTCATGGAAACATGCTTAATGGATCAGTTCCTAAAAGTATGAGGAATCTTCATCGACTTGTGATGTTAGATCTGTCCCGCAACCATCTATCTGGATCAATTCCTGGGGTTTTAATCTCAGGTATGAAAGATATGCAACTGTACATGAACTTGTCATACAATTTCCTGGTAGGAGCTATTCCAGCTGAGCTTGGGTTGTTGCGGTTGATACAATCCATTGACTTCTCAAACAACAATCTCACTGGGATTATTCCAGCCACGATCGGAGGTTGTAGAAATTTGTTCTTTCTTGATCTGTCAGGAAATCATCTTTCCGGTATGCTTCCAGGTAAAGCTTTTACCGGAATGAATATGCTCATGAGCTTGAACCTTTCAAGGAACAAAATAGCTGGTGAAATCCCAGAAGAGTTAGCAAATCCGGAGCACTTGTACTATTTGGACCTTTCTCAGAACCAGTTCAATGGCAGAATCCCTCAAAAACTTTCAGCTCTGAAGTATGTTAACCTTTCCTTTAATCAACTAGAAGGTCCTGTTCCAGACACCGGAATATTTCAAAAGATAAATGCTTCAAGCTTGATTGGAAATCCTGCTCTTTGTGGATCCAAGTCCTTCGCTCCTTGCGGAAAGAAGTATTTGCGACATCTATCAAAAAAGACCTTACTAATTCTCATAACCCTTGGATCTATTATTGTAGTCTTAGCTATAATTTTCTTAATTCTAGGCCTCAACCGATATCGTAAGCTTGAGAAATCTAAAAGTATTGAAAATCCTGAACCATCATTGGATTATGCATGTACCCTTAAGAGGTTTGATAAGAAGGATATGGAGATTGCAACAGAATACTTCAGCGATGAAAACATTCTAGGTTCCAGTACTTTAAGCACTGTCTACCGTGGTCAACTAGACAACGGACAGATTGTAGCTGTAAAAAGATTGAATTTGCAATATTTCTCTGCCGAATCAGATGATTTCTTCAGTAGAGAAATCAAGATTCTTTGTCAACTTAGACATAGGAATTTGGTGAAAGTACTCGGATATGCTTGGGAAAGCCAGAAGCTGAAGGCTATCGTGCTTGAATACATGGAAAATGGGAACTTGGATAGAATAATACATAACCCTGGAACAGATCAAATGAGTTGTTCATTGTCAAAGAGGGTTGATATTTGTGTTTCTGTTGCTAGTGGGATGCAATACCTGCATCATGGATATGATTTTCCCATCATTCACTGCGACTTGAAACCTTCAAACATCCTTCTTGATGGAGACTGGGTAGCCCATGTGAGTGATTTTGGAACTGCTAGAGTGTTGGGGGTGCAAAGCCAAGACACAAGCAGCATTTCCTCTTCAGCAGCTTTTGAAGGCAGTATCGGATATTTGGCTCCAGAGTTTGCATACATGGGGAAAGTGACAACAAAAGTAGATGTGTTCAGTTTTGGTGTAATACTGATGGAATTTCTGACAAAGAAGAGGCCAACTGCCACCATTGAAGCTCATGGACTCCCAATCAGCTTGCAGCAACTGGTAGAGAGAGCTCTAGCAAGTGGAAAGGAAGAAGTTAGTCAAGTTTTGGATCCTGTGCTGGTCTTGAATGATTCAAAGGAGCAAGGGAGGTTAGAAGAACTGCTCAAATTAGCACTAAGCTGTACCGCCCCAAATCCTGATAATAGACCTGACATGAATGAAATTCTGCCTATCCTTCTGAAGTTGCGCAGAGATGAATAG 3471 40.13 MASSVSLAIFMIASFVLVRVLSTQHQSAMEVELEALKAFKSCIQFDPLGALADWTDLNPHCNWSGIICDPDSKRVISITLIDQQLEGEISPFIGNLSALQVLDLTQNSFTGQIPGELGSCSNLSQLTLYRNFLSGHIPLQLGNLGFLQDVDLGNNFLKGSIPDSICNCTNLLAFGVIFNNLTGRIPSNIGNLVDLQILVAYANKLEGSIPISIGKLGALQTLDLSQNNLSGNIPMEIGNLLNLEYISLFENALAGKIPEEIGKCEKLLSLELYNNKFSGPIPSQLGSLIHLQTLRLYTNRLNSTIPQSLLQLKGLTHLLLSENELSGTVSSDIGSLRSLQVLTLHSNSFFGVIPLSLTNLSNLTHLSLSFNFFTGEIPSNLGLLYNLKRLTLSSNFLEGSIPSSIINCTQLSIIDLSFNRLTGKIPMGYGKLQNLTSLLLGSNRIFGEIPDDLFNCSSLEVVDLALNNFTGLLKSSIGKLSNIRVFRAASNSFSGEIPGDIGNLSRLNTLVLAENKFSGQIPGELSKLSLLQALSLHDNALEGRIPEKIFDLKQLVHLHLQNNKFIGPIPDVISRLEFLSYLDLHGNMLNGSVPKSMRNLHRLVMLDLSRNHLSGSIPGVLISGMKDMQLYMNLSYNFLVGAIPAELGLLRLIQSIDFSNNNLTGIIPATIGGCRNLFFLDLSGNHLSGMLPGKAFTGMNMLMSLNLSRNKIAGEIPEELANPEHLYYLDLSQNQFNGRIPQKLSALKYVNLSFNQLEGPVPDTGIFQKINASSLIGNPALCGSKSFAPCGKKYLRHLSKKTLLILITLGSIIVVLAIIFLILGLNRYRKLEKSKSIENPEPSLDYACTLKRFDKKDMEIATEYFSDENILGSSTLSTVYRGQLDNGQIVAVKRLNLQYFSAESDDFFSREIKILCQLRHRNLVKVLGYAWESQKLKAIVLEYMENGNLDRIIHNPGTDQMSCSLSKRVDICVSVASGMQYLHHGYDFPIIHCDLKPSNILLDGDWVAHVSDFGTARVLGVQSQDTSSISSSAAFEGSIGYLAPEFAYMGKVTTKVDVFSFGVILMEFLTKKRPTATIEAHGLPISLQQLVERALASGKEEVSQVLDPVLVLNDSKEQGRLEELLKLALSCTAPNPDNRPDMNEILPILLKLRRDE 1156
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 37495451 37499300 - ClCG01G024390.1 Cla01g02381 265970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g02381 1156 Gene3D Ribonuclease Inhibitor 331 427 IPR032675 -
Cla01g02381 1156 Gene3D Ribonuclease Inhibitor 428 521 IPR032675 -
Cla01g02381 1156 Gene3D Ribonuclease Inhibitor 28 177 IPR032675 -
Cla01g02381 1156 SUPERFAMILY L domain-like 553 789 - -
Cla01g02381 1156 CDD STKc_IRAK 871 1152 - -
Cla01g02381 1156 SUPERFAMILY Protein kinase-like (PK-like) 842 1149 IPR011009 -
Cla01g02381 1156 ProSiteProfiles Protein kinase domain profile. 865 1149 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g02381 1156 Gene3D Ribonuclease Inhibitor 237 330 IPR032675 -
Cla01g02381 1156 Gene3D Ribonuclease Inhibitor 522 628 IPR032675 -
Cla01g02381 1156 SMART serkin_6 865 1149 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g02381 1156 SMART LRR_typ_2 384 408 IPR003591 -
Cla01g02381 1156 SMART LRR_typ_2 528 552 IPR003591 -
Cla01g02381 1156 SMART LRR_typ_2 360 383 IPR003591 -
Cla01g02381 1156 SMART LRR_typ_2 744 769 IPR003591 -
Cla01g02381 1156 SMART LRR_typ_2 650 673 IPR003591 -
Cla01g02381 1156 SMART LRR_typ_2 144 168 IPR003591 -
Cla01g02381 1156 SMART LRR_typ_2 576 599 IPR003591 -
Cla01g02381 1156 SMART LRR_typ_2 336 359 IPR003591 -
Cla01g02381 1156 SMART LRR_typ_2 216 240 IPR003591 -
Cla01g02381 1156 SMART LRR_typ_2 96 120 IPR003591 -
Cla01g02381 1156 SMART LRR_typ_2 674 698 IPR003591 -
Cla01g02381 1156 SMART LRR_typ_2 600 624 IPR003591 -
Cla01g02381 1156 SMART LRR_typ_2 699 723 IPR003591 -
Cla01g02381 1156 SMART LRR_typ_2 288 312 IPR003591 -
Cla01g02381 1156 SMART LRR_typ_2 432 456 IPR003591 -
Cla01g02381 1156 Gene3D Phosphorylase Kinase; domain 1 828 943 - -
Cla01g02381 1156 Pfam Leucine rich repeat 632 687 IPR001611 GO:0005515
Cla01g02381 1156 Pfam Leucine rich repeat 554 613 IPR001611 GO:0005515
Cla01g02381 1156 Pfam Leucine rich repeat 691 736 IPR001611 GO:0005515
Cla01g02381 1156 Gene3D Transferase(Phosphotransferase) domain 1 944 1156 - -
Cla01g02381 1156 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 366 1151 - -
Cla01g02381 1156 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 288 379 - -
Cla01g02381 1156 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 11 298 - -
Cla01g02381 1156 SUPERFAMILY L domain-like 323 618 - -
Cla01g02381 1156 Gene3D Ribonuclease Inhibitor 178 236 IPR032675 -
Cla01g02381 1156 Gene3D Ribonuclease Inhibitor 629 697 IPR032675 -
Cla01g02381 1156 ProSitePatterns Serine/Threonine protein kinases active-site signature. 990 1002 IPR008271 GO:0004672|GO:0006468
Cla01g02381 1156 SUPERFAMILY L domain-like 31 301 - -
Cla01g02381 1156 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2 366 1151 - -
Cla01g02381 1156 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2 288 379 - -
Cla01g02381 1156 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2 11 298 - -
Cla01g02381 1156 Pfam Leucine rich repeat N-terminal domain 32 69 IPR013210 -
Cla01g02381 1156 Pfam Protein kinase domain 866 1146 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g02381 1156 Gene3D Ribonuclease Inhibitor 698 797 IPR032675 -
Cla01g02381 1156 Pfam Leucine Rich Repeat 386 408 IPR001611 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02381 Cla-Chr1:37495451 Cla03g00708 Cla-Chr3:8544270 2.86E-141 dispersed
Cla02g00630 Cla-Chr2:7068500 Cla01g02381 Cla-Chr1:37495451 2.14E-17 dispersed
Cla03g01042 Cla-Chr3:20026988 Cla01g02381 Cla-Chr1:37495451 2.52E-11 dispersed
Cla03g01399 Cla-Chr3:29498870 Cla01g02381 Cla-Chr1:37495451 7.12E-29 dispersed
Cla11g00595 Cla-Chr11:6739030 Cla01g02381 Cla-Chr1:37495451 4.25E-100 dispersed
Cla11g00596 Cla-Chr11:6758921 Cla01g02381 Cla-Chr1:37495451 4.93E-07 dispersed
Cla01g02381 Cla-Chr1:37495451 Cla05g00374 Cla-Chr5:3422514 1.51E-42 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80309 PF00069 Pkinase 8.10E-44 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g02381 K13420 - csv:101215973 1962.19