Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g02387 ATGGCCCAACAAGACCAAGAAAACCAAAGCCAACACCGACGCCGAGCTATGACCAATGGCTTCGATTCTTCATCTGTAAACTGCAAAATTCAAGGTCGAAGAGAAATGGCGGGACTGAGAAGACTGGCGCAATTGAAACCCATAGCCGAAGAAGCATTGGCCGGAACAGTTTTCGTAGCGAAGTTCCTCTGTGGCCTTCATGTCGCCAACACTTACATCTGCACAGCCGCTCTCACCTATGGTCCCAGCATGCTCCCTACTCTGAACCTAACCGGTGATTTCATCTTGGCCGAACGACTCTCCACTCGCTTTGGCAGAGTCGGCGTCGGAGACATTGTCCTCGTGAGGTCTCCTGAAAACCCTCGTAAAGTAATGGCGAAGCGCTTGATGGGTATGGAGGGTGATTCTGTTACCTATGTTGTAGACCCAAAGAACAGTGATTGGAGCGAAACTGTTGTGGTTCCTAAGGGGCATGTTTGGATAGAGGGAGATAATATCTATGATTCAAATGATTCCAGAAATTTTGGGGCCGTTCCATATGGTCTTCTGCAAGGGAAAATATTTTGGAGGATATGGCCACCTGAAAGGTTTGGACCTTTGGAGAAGAGGAAATCAAACGAGGCCGTCTTGTGA 633 48.5 MAQQDQENQSQHRRRAMTNGFDSSSVNCKIQGRREMAGLRRLAQLKPIAEEALAGTVFVAKFLCGLHVANTYICTAALTYGPSMLPTLNLTGDFILAERLSTRFGRVGVGDIVLVRSPENPRKVMAKRLMGMEGDSVTYVVDPKNSDWSETVVVPKGHVWIEGDNIYDSNDSRNFGAVPYGLLQGKIFWRIWPPERFGPLEKRKSNEAVL 210
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 37517715 37519780 + ClCG01G024440.2 Cla01g02387 265976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g02387 210 SUPERFAMILY LexA/Signal peptidase 71 200 IPR036286 -
Cla01g02387 210 PRINTS Bacterial leader peptidase 1 (S26A) family signature 72 88 IPR000223 GO:0006508|GO:0008236|GO:0016020
Cla01g02387 210 PRINTS Bacterial leader peptidase 1 (S26A) family signature 125 137 IPR000223 GO:0006508|GO:0008236|GO:0016020
Cla01g02387 210 PRINTS Bacterial leader peptidase 1 (S26A) family signature 154 173 IPR000223 GO:0006508|GO:0008236|GO:0016020
Cla01g02387 210 PANTHER PEPTIDASE S24/S26A/S26B/S26C FAMILY PROTEIN 39 203 - -
Cla01g02387 210 Pfam Signal peptidase, peptidase S26 148 192 IPR019533 GO:0004252|GO:0006465
Cla01g02387 210 Pfam Signal peptidase, peptidase S26 66 139 IPR019533 GO:0004252|GO:0006465
Cla01g02387 210 CDD S26_SPase_I 81 187 IPR019533 GO:0004252|GO:0006465
Cla01g02387 210 MobiDBLite consensus disorder prediction 1 22 - -
Cla01g02387 210 PANTHER PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED 39 203 - -
Cla01g02387 210 Gene3D Umud Fragment, subunit A 69 205 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02387 Cla-Chr1:37517715 Cla07g00987 Cla-Chr7:26083570 4.95E-45 dispersed
Cla01g02387 Cla-Chr1:37517715 Cla08g01531 Cla-Chr8:28061442 2.11E-13 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g02387 K09647 - csv:101209167 323.553