Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla01g02393 | ATGGGCCGTGAAGGAAACTTCCCGCCTAAAGAAAACAATTTTCGCGCCAAATCTGAACCCCTTATTGGTAGTGGCCAATCAGAAGCTCTTCGGTCTCTCAATCAAGGTTCTCTCTCACTCGCTGTCTCTCTCCGCCGGTTCGTCGACGAAGAGCAAAGCAGAGGAAAGTTAGGGACAAGAGATCTTGGCCCCAGGTTTTATTGCCTTCTTTCTTCAGCATTTTATCTCGTATTTTACCTTATCTGGGTGCTCAGGAATCCCAGTGAGTACATTCAGCCATTCTGTGACGCAGTCACAGAAACTGCTCGCAGTATCGACCCAAAATACCTTAAGGAAGGAGAGCAAGTTTTGGTGGGCTTTGAGGGCCCCTTTGTTTCTCGCCGTGTCACTCCCAGGGAACTTCTCTCTCAGTTTATTGGCTCCATGGTCTGCGTTGAGGGCATTGTTACCAAATGTTCTCTTGTTAGACCAAAAGTTGTCAAAAGTGTCCATTTCTGCCCCACAACTGGAGGTTTTACCAGCCGTGAATACCGTGACATTACATCCAACATGGGCTTGCCCACAGGATCTGTGTATCCCACAAGGGATGACAATGGCAACTTGTTGGTTACTGAGTATGGCCTGTGTAGATATAAAGATCATCAGACCTTATCAATGCAAGAAATGCCTGAAAATTCAGCACCTGGTCAGCTTCCACGAACAGTGGATATCATAGTTGAGGACGACTTAGTTGACTGTTGCAAGCCAGGTGATCGTGTTGCTATTGTAGGAATATATAAAGCTATTCCAGGAAAAAGCAAGGGCAGCTTGAATGGAGTGTTCAGGACTGTTCTTGTTGCTAACAATGTTTCTCTACTAAACAAAGAGGCTAATGCACCGATATATAGTCCTGAGGACTTGAAGAACATTAAAAAGATAGCGGAAAGAGATGACACATTTGACCTTCTCGGAAATTCTCTTGCACCTTCCATATATGGACATTCATGGATAAAAAAAGCCGTGATACTATTGATGCTTAGTGGAGTGGAGAAGAACTTGAAGAATGGCACCCACTTAAGAGGTGATATCAACATGATGATGGTTGGTGATCCTTCTGTTGCCAAGTCACAACTTTTAAGGGCAATCATGAATATTGCACCCTTAGCAATATCCACAACAGGCCGTGGTTCATCTGGTGTCGGGTTAACTGCTGCTGTTACATCAGATCAGGAAACAGGAGAACGAAGGCTAGAAGCTGGTGCAATGGTTCTTGCTGATCGAGGTGTTGTCTGTATTGATGAGTTTGACAAGATGAATGATCAAGATAGGGTTGCAATACATGAAGTTATGGAGCAGCAGACTGTGACTATTGCCAAAGCTGGCATTCATGCTTCACTGAATGCTCGGTGCAGTGTGGTAGCAGCTGCAAATCCCATATATGGATCTTACGATCGATCGTTGACACCAACAAAGAATATAGGTCTTCCAGATTCTCTACTCTCTCGATTTGATCTACTGTTTATTGTATTGGATCAAATGGATCCCGATATTGATCGTCATATTTCGGAGCATGTGTTGCGTATGCACCGGTATCGTTCAGTACTTGATGGAGGTGAGGCTGGGGGCTCAGTGTACGGAAGAGAGGATGAAGCTGAAGCCGACACTTCTGTCTTTGTCAAGTATAATAGAATGCTTCATGGGAAAAAGACCGAACGTGGTCGGAAGCGTGATACCCTCACCATCAAGTTTCTTAAGAAGTACATTCATTATGCTAAGCATAGGATACAACCCGATCTAACTGATGAGACTGGAGGAACTCTTCCAATTACCGCGAGAACCCTGGAAACCATTATACGACTCTCAACTGCCCATGCGAAATTAAAGTTGAGTAGAAAGGTTTCCAAATCTGATGTCGAGGCTGCCTTGAAAGTTCTTAATTTTGCTATATATCATAAAGAGTTGACTGACATGGAAGAGCGTGAGCAAGAAAGAGAGAAAGAATTGGAAAGAAAACGCAGAGCTGAACATCAAACAGTGGAAAATGATAGACCAGAACGTAGTACCAAAAGAAGAGAGGAGGGCTCAAGGACAGATACCATGGAAATTGATGATCCTCCTTCTGAACCTGTACTTGATCTGTCTGCAGAAAGAATAGAAGCATTCAATTCTTTGTTTGGTCAGCACATGCGTGCAAACCACCTGGATGTTATATCTATTGCAGACATTGAGAATGTCGTTAATGCTGCAGCAGATACTCATTACACTACCGCTGAAATAATGTTGCTCTTGCAGAGACTTCAAGATGATAACAGGGTAATGATAGCTGATAGCACGGTGCATATGATATCATGA | 2331 | 43.67 | MGREGNFPPKENNFRAKSEPLIGSGQSEALRSLNQGSLSLAVSLRRFVDEEQSRGKLGTRDLGPRFYCLLSSAFYLVFYLIWVLRNPSEYIQPFCDAVTETARSIDPKYLKEGEQVLVGFEGPFVSRRVTPRELLSQFIGSMVCVEGIVTKCSLVRPKVVKSVHFCPTTGGFTSREYRDITSNMGLPTGSVYPTRDDNGNLLVTEYGLCRYKDHQTLSMQEMPENSAPGQLPRTVDIIVEDDLVDCCKPGDRVAIVGIYKAIPGKSKGSLNGVFRTVLVANNVSLLNKEANAPIYSPEDLKNIKKIAERDDTFDLLGNSLAPSIYGHSWIKKAVILLMLSGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGSYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRHISEHVLRMHRYRSVLDGGEAGGSVYGREDEAEADTSVFVKYNRMLHGKKTERGRKRDTLTIKFLKKYIHYAKHRIQPDLTDETGGTLPITARTLETIIRLSTAHAKLKLSRKVSKSDVEAALKVLNFAIYHKELTDMEEREQEREKELERKRRAEHQTVENDRPERSTKRREEGSRTDTMEIDDPPSEPVLDLSAERIEAFNSLFGQHMRANHLDVISIADIENVVNAAADTHYTTAEIMLLLQRLQDDNRVMIADSTVHMIS | 776 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 37552694 | 37558672 | + | ClCG01G024510.2 | Cla01g02393 | 265982 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla01g02393 | 776 | ProSitePatterns | MCM family signature. | 421 | 429 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
Cla01g02393 | 776 | Pfam | MCM P-loop domain | 300 | 522 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
Cla01g02393 | 776 | Pfam | MCM OB domain | 132 | 262 | IPR033762 | - | |
Cla01g02393 | 776 | ProSiteProfiles | MCM family domain profile. | 312 | 518 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
Cla01g02393 | 776 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 83 | 768 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
Cla01g02393 | 776 | MobiDBLite | consensus disorder prediction | 651 | 701 | - | - | |
Cla01g02393 | 776 | MobiDBLite | consensus disorder prediction | 651 | 696 | - | - | |
Cla01g02393 | 776 | SMART | AAA_5 | 354 | 507 | IPR003593 | - | |
Cla01g02393 | 776 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 413 | 427 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
Cla01g02393 | 776 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 465 | 477 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
Cla01g02393 | 776 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 441 | 454 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
Cla01g02393 | 776 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 353 | 368 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
Cla01g02393 | 776 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 492 | 500 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
Cla01g02393 | 776 | PANTHER | DNA HELICASE | 83 | 768 | - | - | |
Cla01g02393 | 776 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 322 | 655 | IPR027417 | - | |
Cla01g02393 | 776 | Gene3D | - | 132 | 262 | IPR012340 | - | |
Cla01g02393 | 776 | Gene3D | - | 294 | 664 | IPR027417 | - | |
Cla01g02393 | 776 | SUPERFAMILY | Nucleic acid-binding proteins | 81 | 280 | IPR012340 | - | |
Cla01g02393 | 776 | Pfam | MCM AAA-lid domain | 598 | 639 | IPR041562 | - | |
Cla01g02393 | 776 | Gene3D | - | 158 | 212 | - | - | |
Cla01g02393 | 776 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 204 | 218 | IPR008046 | GO:0003677|GO:0005524|GO:0006270|GO:0042555 | |
Cla01g02393 | 776 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 230 | 242 | IPR008046 | GO:0003677|GO:0005524|GO:0006270|GO:0042555 | |
Cla01g02393 | 776 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 481 | 491 | IPR008046 | GO:0003677|GO:0005524|GO:0006270|GO:0042555 | |
Cla01g02393 | 776 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 514 | 524 | IPR008046 | GO:0003677|GO:0005524|GO:0006270|GO:0042555 | |
Cla01g02393 | 776 | Coils | Coil | 644 | 670 | - | - | |
Cla01g02393 | 776 | SMART | mcm | 127 | 643 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla01g02393 | Cla-Chr1:37552694 | Cla09g00472 | Cla-Chr9:4509210 | 6.23E-105 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla01g02393 | K02541 | - | csv:101210889 | 1301.96 |