Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g02393 ATGGGCCGTGAAGGAAACTTCCCGCCTAAAGAAAACAATTTTCGCGCCAAATCTGAACCCCTTATTGGTAGTGGCCAATCAGAAGCTCTTCGGTCTCTCAATCAAGGTTCTCTCTCACTCGCTGTCTCTCTCCGCCGGTTCGTCGACGAAGAGCAAAGCAGAGGAAAGTTAGGGACAAGAGATCTTGGCCCCAGGTTTTATTGCCTTCTTTCTTCAGCATTTTATCTCGTATTTTACCTTATCTGGGTGCTCAGGAATCCCAGTGAGTACATTCAGCCATTCTGTGACGCAGTCACAGAAACTGCTCGCAGTATCGACCCAAAATACCTTAAGGAAGGAGAGCAAGTTTTGGTGGGCTTTGAGGGCCCCTTTGTTTCTCGCCGTGTCACTCCCAGGGAACTTCTCTCTCAGTTTATTGGCTCCATGGTCTGCGTTGAGGGCATTGTTACCAAATGTTCTCTTGTTAGACCAAAAGTTGTCAAAAGTGTCCATTTCTGCCCCACAACTGGAGGTTTTACCAGCCGTGAATACCGTGACATTACATCCAACATGGGCTTGCCCACAGGATCTGTGTATCCCACAAGGGATGACAATGGCAACTTGTTGGTTACTGAGTATGGCCTGTGTAGATATAAAGATCATCAGACCTTATCAATGCAAGAAATGCCTGAAAATTCAGCACCTGGTCAGCTTCCACGAACAGTGGATATCATAGTTGAGGACGACTTAGTTGACTGTTGCAAGCCAGGTGATCGTGTTGCTATTGTAGGAATATATAAAGCTATTCCAGGAAAAAGCAAGGGCAGCTTGAATGGAGTGTTCAGGACTGTTCTTGTTGCTAACAATGTTTCTCTACTAAACAAAGAGGCTAATGCACCGATATATAGTCCTGAGGACTTGAAGAACATTAAAAAGATAGCGGAAAGAGATGACACATTTGACCTTCTCGGAAATTCTCTTGCACCTTCCATATATGGACATTCATGGATAAAAAAAGCCGTGATACTATTGATGCTTAGTGGAGTGGAGAAGAACTTGAAGAATGGCACCCACTTAAGAGGTGATATCAACATGATGATGGTTGGTGATCCTTCTGTTGCCAAGTCACAACTTTTAAGGGCAATCATGAATATTGCACCCTTAGCAATATCCACAACAGGCCGTGGTTCATCTGGTGTCGGGTTAACTGCTGCTGTTACATCAGATCAGGAAACAGGAGAACGAAGGCTAGAAGCTGGTGCAATGGTTCTTGCTGATCGAGGTGTTGTCTGTATTGATGAGTTTGACAAGATGAATGATCAAGATAGGGTTGCAATACATGAAGTTATGGAGCAGCAGACTGTGACTATTGCCAAAGCTGGCATTCATGCTTCACTGAATGCTCGGTGCAGTGTGGTAGCAGCTGCAAATCCCATATATGGATCTTACGATCGATCGTTGACACCAACAAAGAATATAGGTCTTCCAGATTCTCTACTCTCTCGATTTGATCTACTGTTTATTGTATTGGATCAAATGGATCCCGATATTGATCGTCATATTTCGGAGCATGTGTTGCGTATGCACCGGTATCGTTCAGTACTTGATGGAGGTGAGGCTGGGGGCTCAGTGTACGGAAGAGAGGATGAAGCTGAAGCCGACACTTCTGTCTTTGTCAAGTATAATAGAATGCTTCATGGGAAAAAGACCGAACGTGGTCGGAAGCGTGATACCCTCACCATCAAGTTTCTTAAGAAGTACATTCATTATGCTAAGCATAGGATACAACCCGATCTAACTGATGAGACTGGAGGAACTCTTCCAATTACCGCGAGAACCCTGGAAACCATTATACGACTCTCAACTGCCCATGCGAAATTAAAGTTGAGTAGAAAGGTTTCCAAATCTGATGTCGAGGCTGCCTTGAAAGTTCTTAATTTTGCTATATATCATAAAGAGTTGACTGACATGGAAGAGCGTGAGCAAGAAAGAGAGAAAGAATTGGAAAGAAAACGCAGAGCTGAACATCAAACAGTGGAAAATGATAGACCAGAACGTAGTACCAAAAGAAGAGAGGAGGGCTCAAGGACAGATACCATGGAAATTGATGATCCTCCTTCTGAACCTGTACTTGATCTGTCTGCAGAAAGAATAGAAGCATTCAATTCTTTGTTTGGTCAGCACATGCGTGCAAACCACCTGGATGTTATATCTATTGCAGACATTGAGAATGTCGTTAATGCTGCAGCAGATACTCATTACACTACCGCTGAAATAATGTTGCTCTTGCAGAGACTTCAAGATGATAACAGGGTAATGATAGCTGATAGCACGGTGCATATGATATCATGA 2331 43.67 MGREGNFPPKENNFRAKSEPLIGSGQSEALRSLNQGSLSLAVSLRRFVDEEQSRGKLGTRDLGPRFYCLLSSAFYLVFYLIWVLRNPSEYIQPFCDAVTETARSIDPKYLKEGEQVLVGFEGPFVSRRVTPRELLSQFIGSMVCVEGIVTKCSLVRPKVVKSVHFCPTTGGFTSREYRDITSNMGLPTGSVYPTRDDNGNLLVTEYGLCRYKDHQTLSMQEMPENSAPGQLPRTVDIIVEDDLVDCCKPGDRVAIVGIYKAIPGKSKGSLNGVFRTVLVANNVSLLNKEANAPIYSPEDLKNIKKIAERDDTFDLLGNSLAPSIYGHSWIKKAVILLMLSGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGSYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRHISEHVLRMHRYRSVLDGGEAGGSVYGREDEAEADTSVFVKYNRMLHGKKTERGRKRDTLTIKFLKKYIHYAKHRIQPDLTDETGGTLPITARTLETIIRLSTAHAKLKLSRKVSKSDVEAALKVLNFAIYHKELTDMEEREQEREKELERKRRAEHQTVENDRPERSTKRREEGSRTDTMEIDDPPSEPVLDLSAERIEAFNSLFGQHMRANHLDVISIADIENVVNAAADTHYTTAEIMLLLQRLQDDNRVMIADSTVHMIS 776
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 37552694 37558672 + ClCG01G024510.2 Cla01g02393 265982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g02393 776 ProSitePatterns MCM family signature. 421 429 IPR018525 GO:0003677|GO:0005524|GO:0006260
Cla01g02393 776 Pfam MCM P-loop domain 300 522 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cla01g02393 776 Pfam MCM OB domain 132 262 IPR033762 -
Cla01g02393 776 ProSiteProfiles MCM family domain profile. 312 518 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cla01g02393 776 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 83 768 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cla01g02393 776 MobiDBLite consensus disorder prediction 651 701 - -
Cla01g02393 776 MobiDBLite consensus disorder prediction 651 696 - -
Cla01g02393 776 SMART AAA_5 354 507 IPR003593 -
Cla01g02393 776 PRINTS Mini-chromosome maintenance (MCM) protein family signature 413 427 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cla01g02393 776 PRINTS Mini-chromosome maintenance (MCM) protein family signature 465 477 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cla01g02393 776 PRINTS Mini-chromosome maintenance (MCM) protein family signature 441 454 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cla01g02393 776 PRINTS Mini-chromosome maintenance (MCM) protein family signature 353 368 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cla01g02393 776 PRINTS Mini-chromosome maintenance (MCM) protein family signature 492 500 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cla01g02393 776 PANTHER DNA HELICASE 83 768 - -
Cla01g02393 776 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 322 655 IPR027417 -
Cla01g02393 776 Gene3D - 132 262 IPR012340 -
Cla01g02393 776 Gene3D - 294 664 IPR027417 -
Cla01g02393 776 SUPERFAMILY Nucleic acid-binding proteins 81 280 IPR012340 -
Cla01g02393 776 Pfam MCM AAA-lid domain 598 639 IPR041562 -
Cla01g02393 776 Gene3D - 158 212 - -
Cla01g02393 776 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 204 218 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Cla01g02393 776 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 230 242 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Cla01g02393 776 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 481 491 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Cla01g02393 776 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 514 524 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Cla01g02393 776 Coils Coil 644 670 - -
Cla01g02393 776 SMART mcm 127 643 IPR031327 GO:0003677|GO:0005524|GO:0032508
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02393 Cla-Chr1:37552694 Cla09g00472 Cla-Chr9:4509210 6.23E-105 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g02393 K02541 - csv:101210889 1301.96