Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g02397 ATGAATTCCCTTTTGGCTTTTCTTTCGCCACTGCTTCCGTTTGTGGCCTCTCTTCTGTTTCTCGTCCTTTTTCTTGAGCAGATCTCTTATTTGAAGAAGAAACGCTCTGTTCCTGGTCCTCCTCTTGTTGTCCCCTTCGTCGGCAACGCAATTCCTCTGGTCAGAAACCCTGCTCGTTTCTGGGAAATTCAGGCTTCTTTGGCTAAATCCTCCGGAGTTGGTTTCTCCGTCAACTATATCGCTGGAAACTTCATCGTCTTCATTCGCGACACTGAGCTCTCTCACAAGATTTTCGCCAATGTGCGTTCCGATGCAATGAATCTCGTCGGTCATCCCTTTGGGAAGAAGCTATTTGGCGAGGATAATCTGATTTATATGTTAGGACAAAAGCATAAGGATCTCCGCCGTCGAATCGCTCCTAATTTCACGCCCAAAGCGCTCTCCATCTACACCGCGCTTCAGCAGATCATCATTCTCAAGCACTTGAAGCTTTGGGATCAGAAGTCGTCTGAATCCTCGCCGAAGCCGATTCCCTTGAGGTATCTCGCTCGAGATCTTAACCTTGAAACCTCTCAGATGGTGTTCGTCGGACCGTATTTAGGCGAAAAGGTTCGCGAGAAGTTCAGAGTCGATTACAACATCTTCAATGTCGGCCTGATGAAACTTCCCATCGATTTGCCTGGAACAGGTTTCAGAAATGCGAAACTCGCCGTCGACCGGCTGGTGGAGGTCCTTGCCGACTGCGCAGATAAGAGCAAGGCGAAGATGAAGAGAGAAGAAGAGCCGTCGTGTTTGATCGACTTTTGGATGCAGGACACCGTAAAAGAACTCGAGGCTGCAGCAGCAGCCGGCGAGCCAGAGCCCGTCCACACCAGTAACTTCGAGCTCGGCCTGTATCTCTTCGATTTCCTCTTCGCCGCTCAAGACGCTTCCACTTCGTCGCTTCTATGGGCCGTCAGTCTGCTGGACTCGCATCCGGAGGTGGTCGCCAAAGTTCGGGAAGAAGTCAAATCCATCTGGTCGCCGGAATCGGATTCACTGATCTCAGCGGAGCAGCTTCTGGAAATGAAGTACACTCAGGCAGTAGCGCGTGAGGTGGTCCGTTACCGCGCTCCGGCGACGGTTGTTCCGCACGTGGCGGCGGAGGAGTTCCCGTTGACGGATTCATACACGATCCCAAAAGGCGCAATCGTGTTCCCATCTGCGTACGAGTCGAGTTTCCAGGGATTCGTAGAACCGGAGCGGTTCGACCCGGAACGGTTCTCGGAGGAAAGGCAAGAGGACCGAATTTTCAAAAGGAACTTTCTGGCATTCGGTGCTGGGTCCCATCAGTGTGTTGGGCAACGGTACGCGCTCAACCAACTTGTGCTCTTCATCGCAATGTTTTGTACGTTGCTTGATTTCAAGAGGCACAGATCCGACGGCTGTGATGAAATCGCCTTCAATCCCACCATCTGTCCCAAAGATGACTGCATGGTCTCCATTTCCAAGCGGTGCCCTCGATTTCCCAATCTTACGCTTGAATAA 1527 51.6 MNSLLAFLSPLLPFVASLLFLVLFLEQISYLKKKRSVPGPPLVVPFVGNAIPLVRNPARFWEIQASLAKSSGVGFSVNYIAGNFIVFIRDTELSHKIFANVRSDAMNLVGHPFGKKLFGEDNLIYMLGQKHKDLRRRIAPNFTPKALSIYTALQQIIILKHLKLWDQKSSESSPKPIPLRYLARDLNLETSQMVFVGPYLGEKVREKFRVDYNIFNVGLMKLPIDLPGTGFRNAKLAVDRLVEVLADCADKSKAKMKREEEPSCLIDFWMQDTVKELEAAAAAGEPEPVHTSNFELGLYLFDFLFAAQDASTSSLLWAVSLLDSHPEVVAKVREEVKSIWSPESDSLISAEQLLEMKYTQAVAREVVRYRAPATVVPHVAAEEFPLTDSYTIPKGAIVFPSAYESSFQGFVEPERFDPERFSEERQEDRIFKRNFLAFGAGSHQCVGQRYALNQLVLFIAMFCTLLDFKRHRSDGCDEIAFNPTICPKDDCMVSISKRCPRFPNLTLE 508
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 37580054 37581580 - ClCG01G024550.1 Cla01g02397 265986
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g02397 508 PANTHER CYTOCHROME P450 61 15 495 - -
Cla01g02397 508 SUPERFAMILY Cytochrome P450 30 498 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla01g02397 508 PANTHER CYTOCHROME P450 26 15 495 - -
Cla01g02397 508 Pfam Cytochrome P450 38 469 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla01g02397 508 PRINTS P450 superfamily signature 306 323 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla01g02397 508 PRINTS P450 superfamily signature 361 372 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla01g02397 508 PRINTS P450 superfamily signature 436 445 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla01g02397 508 PRINTS P450 superfamily signature 445 456 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla01g02397 508 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 438 447 IPR017972 GO:0005506|GO:0016705
Cla01g02397 508 Gene3D Cytochrome P450 28 501 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla01g02397 508 PRINTS E-class P450 group I signature 315 341 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla01g02397 508 PRINTS E-class P450 group I signature 399 423 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla01g02397 508 PRINTS E-class P450 group I signature 435 445 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla01g02397 508 PRINTS E-class P450 group I signature 445 468 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02397 Cla-Chr1:37580054 Cla06g00065 Cla-Chr6:691037 8.79E-25 dispersed
Cla01g02397 Cla-Chr1:37580054 Cla05g00280 Cla-Chr5:2526050 1.27E-30 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g02397 K09832 - csv:101221194 924.465