Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g02427 ATGGCTTCCAGGTCCAGCAGTCATAGCAAATCGCGGGTGGGGAGATACGAGCTGGGACGAACCCTTGGAGAGGGCAGCTTCGCCAAGGTTAAGTTCGCTCGGAATTGCGAGACGGGAGAGAACGTAGCCATCAAAATCCTCGACAAAGAGGATATTCTCAAACACAAGATGATCGGGCAGATTAAACGTGAAATATCCACTATGAAACTCATTAGACATCCAAATGTCATTCGCATGTACGAGGTGATGGCTAGCAAGACCAAGATATATATTGTTTTGGAATTTGTAACCGGTGGAGAACTATTCGCCAAAATTGTGAGATACAGTGACTGGTTTTATGTCGTCTCCATGCATGCAATTGTAACTGAGAATTTATTATTGGATGCTAGTGGCGTTCTAAAAATTTCAGATTTTGGATTGAGTGCTCTACCTCAACAAGTTCGAGGTGATGGATTACTTCACACAACATGCGGAACGCCCAATTATGTTGCTCCAGAGGTTATCAACAATAAAGGGTACTATGGAGCAAAGGCTGACCTATGGTCATGTGGGGTTATCCTTTTTGTCCTCATGGCAGGCTACTTGCCGTTTGAAGACTCCAATCTCATGGCATTGTATAAAAAGATATTCAAGGCAGACTTCACATGTCCTCCATGGTTCTCCTCTAGTGCCAAGAAATTAATCAAGAGAATCCTGGATCCGAATCCATTAACTAGAATTACAATTGCTGAAGTCCTTGAGAATGATTGGTTTAAGAAAGGATACAAGCCACCCACTTTTGAAAATGACGAAATCAGTATTGATAACGTTGATGACATCTTTAATGAATCAGGGGCCACTGATAACCTTGTTGTTGAGAGGAGAGAAGATAGATCTGCATCACTTGCATCACCTGTCACCATGAATGCATTTGAGCTCATCTCGAAATCTCGGGGCCTCAACCTTGCCACTCTTTTTGAGAAGCAAATGGGGATAATTAAACGTGAAACGAGATTCACATCCAATTGTCCAGCAGATGAAATCATTTCGAAGATAAAAAACACTGCTGTTCCTTTGGGCTTTGATGTGAAGATTAATAACTTCAAGATGAAGCTCCAAGGGGAAAAAACTGGACGCAAAGGTCATTTATCAGTTGCAACAGAGTTCTACAATAACCTCTCAACTGGACTGAAAGATATCGTATGGAGATACGGAGACGAGATGGAGCAGGAAAGTAATGAAATACCATCTTCTCTGCAACAAGCTTTTGGGAGGTGCAGGATGTTGTTTTCTCGCGGACTTTCCCGGATTTCGAGGATTCCCAGAAATAGCTCCCGTTGTCGGTGGTTTCTGTCTCATCGATCAGATACTCGTCCAGCTCTTATACCTAATGTTCCCTCTTTGCATCCTTCGGAATCTGATCGCCAGGCTCTAGGATGCAGAGAAATCATGTACTTGGCTTCTCCCACTTTTCATGGTTTGGGACGTCAAATGCATCATCAAAGCAGCTCTGTAGTTGAGGAACAGCTTGATCCATTCTCACTTGTTGCAGATGAGTTATCGCTTCTTGCCAATAGACTACGGGCAATGGTAGTTGCTGAGGTTCCAAAACTTGCTTCTGCTGCTGAATATTTCTTCAAATTAGGAGTTGAAGGGAAGAGATTTCGGCCAACGGTTTTATTGCTGATGGCAACTGCCTTAAACGTGTCAATTCCAAAACCTCTTCCTCATTTGGTAGGAGACAATTTGACAATGGATCTACGCACAAGACAACAATGCGTGGCCGAAATCACAGAAATGATTCATGTGGCCAGCCTTCTACATGATGATGTATTGGATGATGCAGACACAAGACGTGGCATTGGTTCGTTAAATTTTGTGATGGGAAATAAGGTAGTCTCTATGAACATTAACTTTGAGTTGATGCTAATGCCGATATCAGTTTTAGCTGGAGACTTTTTGCTCTCTCGAGCGTGTGTTGCACTTGCCTCTTTAAAGAACACAGAGGTGGTATCATTAATAGCACAAGTTGTTGAACATCTCGTGACTGGTGAAACTATGCAAATGACCACTACATCTGATCAACGTTATAGCATGGAATATTACATGCAGAAGACGTATTACAAGACTGCATCACTGATTTCCAACAGCTGCAAATCTGTAGCCCTTCTTGCCGGGCAAACAGCCGAAGTTGCGATGTTGGCTTATGAGTATGGAAAAAATCTGGGAATCATCACAGCTCCGTTATTATTTGCCATGGAAGAGTTTCCCCAGCTGCGTACGGTTGTGGAACATGGTTTTGACAATCCTGAAAACGTTAACATTGCAATGGAGTACCTTGGTAAGAGTCATGGAATTCAACGTGCGAGAGAGCTAGCAGCAAAGCATGCCAATCTAGCTGCAGAAGCCATTGATTCTCTACCTGAGAACGATGATGAAGACGTAAGAAAGTCGAGAAGGGCGCTCGTAGATCTCACCCAAATAGTCATTACAAGAACGAAGTGA 2484 43.0 MASRSSSHSKSRVGRYELGRTLGEGSFAKVKFARNCETGENVAIKILDKEDILKHKMIGQIKREISTMKLIRHPNVIRMYEVMASKTKIYIVLEFVTGGELFAKIVRYSDWFYVVSMHAIVTENLLLDASGVLKISDFGLSALPQQVRGDGLLHTTCGTPNYVAPEVINNKGYYGAKADLWSCGVILFVLMAGYLPFEDSNLMALYKKIFKADFTCPPWFSSSAKKLIKRILDPNPLTRITIAEVLENDWFKKGYKPPTFENDEISIDNVDDIFNESGATDNLVVERREDRSASLASPVTMNAFELISKSRGLNLATLFEKQMGIIKRETRFTSNCPADEIISKIKNTAVPLGFDVKINNFKMKLQGEKTGRKGHLSVATEFYNNLSTGLKDIVWRYGDEMEQESNEIPSSLQQAFGRCRMLFSRGLSRISRIPRNSSRCRWFLSHRSDTRPALIPNVPSLHPSESDRQALGCREIMYLASPTFHGLGRQMHHQSSSVVEEQLDPFSLVADELSLLANRLRAMVVAEVPKLASAAEYFFKLGVEGKRFRPTVLLLMATALNVSIPKPLPHLVGDNLTMDLRTRQQCVAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKVVSMNINFELMLMPISVLAGDFLLSRACVALASLKNTEVVSLIAQVVEHLVTGETMQMTTTSDQRYSMEYYMQKTYYKTASLISNSCKSVALLAGQTAEVAMLAYEYGKNLGIITAPLLFAMEEFPQLRTVVEHGFDNPENVNIAMEYLGKSHGIQRARELAAKHANLAAEAIDSLPENDDEDVRKSRRALVDLTQIVITRTK 827
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 37880019 37900794 + ClCG01G024850.2 Cla01g02427 266016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g02427 827 Pfam NAF domain 298 357 IPR004041 GO:0007165
Cla01g02427 827 ProSiteProfiles NAF domain profile. 296 320 IPR018451 GO:0007165
Cla01g02427 827 PANTHER SERINE/THREONINE KINASE 9 381 - -
Cla01g02427 827 CDD CIPK_C 302 383 - -
Cla01g02427 827 Gene3D Transferase(Phosphotransferase) domain 1 115 258 - -
Cla01g02427 827 ProSitePatterns Polyprenyl synthases signature 1. 599 613 IPR033749 -
Cla01g02427 827 Gene3D Kinase associated domain 1, KA1 296 396 - -
Cla01g02427 827 SUPERFAMILY Protein kinase-like (PK-like) 13 252 IPR011009 -
Cla01g02427 827 Pfam Polyprenyl synthetase 530 737 IPR000092 GO:0008299
Cla01g02427 827 SMART serkin_6 16 251 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g02427 827 Pfam Protein kinase domain 122 251 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g02427 827 Pfam Protein kinase domain 16 106 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g02427 827 ProSiteProfiles Protein kinase domain profile. 16 251 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g02427 827 CDD Trans_IPPS_HT 526 825 IPR000092 GO:0008299
Cla01g02427 827 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 9 381 - -
Cla01g02427 827 Gene3D Farnesyl Diphosphate Synthase 496 827 IPR008949 -
Cla01g02427 827 ProSitePatterns Protein kinases ATP-binding region signature. 22 45 IPR017441 GO:0005524
Cla01g02427 827 Gene3D Phosphorylase Kinase; domain 1 5 95 - -
Cla01g02427 827 SUPERFAMILY Terpenoid synthases 499 826 IPR008949 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla01g02427 Cla03g00613 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02427 Cla-Chr1:37880019 Cla05g00055 Cla-Chr5:609156 2.98E-166 dispersed
Cla01g01586 Cla-Chr1:30527955 Cla01g02427 Cla-Chr1:37880019 2.94E-06 transposed
Cla02g01320 Cla-Chr2:27349699 Cla01g02427 Cla-Chr1:37880019 4.67E-07 transposed
Cla01g02427 Cla-Chr1:37880019 Cla03g00613 Cla-Chr3:7315854 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80310 PF00348 polyprenyl_synt 1.40E-41 CL0613 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g02427 - - csv:101214052 708.753