Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla01g02432 | ATGAAGTCGGCCATTGAAGAGTTGTGTATGTGGGGGGTTTGGGTAGAGAGAATTAGATGCGGGCGAGTCGTTGTTGCCTTCTTCGAAGATACTTTGGTGCTTCAAATTTGTCGGTCAATTTCTTTTTGTTTGTTGGATCTCACTGAAATGAGGCTTTCAACTGCTGGTTTTAGTCCTCAGGCCCCGGAAGGGGAGGGGAGAGTTCTTAACTCGGAGCTTTGGCATGCATGTGCGGGCCCTCTTGTTTCTCTACCTGCTGTTGGAAGTCGGGTTGTTTATTTTCCACAGGGTCACAGCGAGCAGGTTGCCATATCAACCAACAGAGAAGTCGATGCCCATATACCGAGTTATCCAAGCTTGCCGCCCCAACTTATCTGTCAGCTTCACAATGTTACAATGCATGCAGATGTTGAGACAGATGAAGTGTATGCCCAAATGACCTTGCAACCGCTCACTGCTCAAGAGCAAAAGGAGCCTTATCTTCCAGCTGAGTTGGGTGCCCCCAGCAAACAACCAACCAATTACTTTTGTAAAACATTAACAGCAAGTGACACAAGTACACATGGAGGATTTTCTGTTCCTCGTCGTGCTGCTGAGAAAGTGTTTCCTCCACTGGACTTTTCTCAGCAGCCACCGGCTCAGGAGTTAATTGCCAGGGATCTGCACGATAATGAATGGAAATTTAGGCATATCTTTCGTGGCCAGCCCAAACGGCATCTTCTTACAACTGGATGGAGTGTGTTTGTAAGTGCTAAGAGGCTTGTTGCTGGCGATTCAGTTATCTTTATTTGGAATGAAAAAAATCAATTACTATTGGGGATCCGTCGAGCTAATCGACCACAAACGGTAATGCCCTCGTCCGTTTTATCTAGTGACAGCATGCACTTGGGGCTTCTTGCTGCTGCAGCACATGCAGCTGCTACAAATAGCCGGTTCACGATATTTTATAATCCAAGGGCTAGCCCGTCAGAGTTCATCATACCTCTAGCCAAGTATGTCAAAGCTGTGTACCATACCCGTGTTTCAGTTGGTATGCGCTTTAGAATGCTATTTGAAACGGAAGAATCAAGTGTTCGTCGCTACATGGGCACTATTACTGGTATCGGTGATTTAGATTCTACCCGGTGGCCAAATTCACACTGGCGCTCCGTCAAGGTTGGATGGGATGAATCTACAGCTGGGGAGAGACAGCCAAGGGTTTCCTTATGGGAGATCGAGCCACTTACAACCTTCCCAATGTATCCTTCTCCATTTCCCCTCAGGCTTAAGCGACCCTGGCCAACTGGATTTCCTTCTTTCCATGGTCTCAAAGAGGATGATCTGGGATTGAATTCTCAACTAATGTGGCTTCGGGGAGATGGTCTAGATCGTGGAATTCAACCTCTGAACTTCCCCGGAATTGGAGTTGCACCATGGATGCAGCCGAGGCTTGATGCTTCAATGGTGGGTCTGCAGCCAGAGATATATCAAGCAATGGCTGCTGCTGCACTACAGGAGATGAGAACTGTAGATCCTGCTAAGGTGCAGGCTGCTTCGCTTCTTCAATTCCAACAAACCCAAAATCTTCCCAACAGACCTACTTTCATGCCACCTCAGATGTTGCAGCCTCAGCCTCAACCTCAGCCTCCACAGACCTTTCTTCAAGGTGATGAAAACCAACATCTCTCTCATTCTCAGGCCCAAAGCCAGCCTACTGTTCTTCAGCAGGAGATAAAGCATCAAACATTCAACAACCAGCAGCAGCAGCAGCAGCAGCAACAACAACAGCAACAACCACAACAGCAAGTGTTTGATCACCAACAAATTCCAAGTCCCATATCTACAATGTCTCAGTTCAGTTCTGCATCCCAATCCCAATCCCAATCCCTGCAAACTATTCCTCCATTATGTCGGCAGCAAAGTTTTTCTGATTCTAATGCCAACCATGTAACGAGTCCCATCATTTCACCCTTGCACAGCCTGTTAGGTTCATTTCCGCAAGATGAATCATCTCAGTTGCTTAATCTGCCTCGAACCAATCCCATGATACATTCATCTACTTGGCCGTCAAAGCGAGCTGCAGTGGATCCTCTTCTCTCTTCTGGAAATTCTCAGTTTGTTCTTTCCCAAGGGGAAAACATGGGGACAACTCAGACTAATATCTCTCAGAATGCTATTTTGTTGCCGCCTTTTCCTGGAAGAGAGTGTTCATTAGATCAAGGGAATGCTGATCCGCAGAGTAATCTTCTCTTTGGTGTCAATATAGAGCCTTCATCTCTTTTAATGCAGAATGGCATGCCAAATCTTAGGGGAATTTGCAGTGACAGTGACTCAACAGCTATACCTTTTTCATCCAATTATGTGAATACTGCTGGTAACAACTTCTCTGCCAGTCCAACTGGAACAGGGACACCTTCCAATTGCATTGAGGATTCAGGTTTCTTGCAGTCTCCAGAAAACACAGGCCAAGTTTACAAGTCGGGGTCCTTCGGTAGATCACTGGATATTTCCAAATTCAGTAGCTACCATCAGCTACGCAGTGAGCTCGCTCACATGTTCGGCCTTGAAGGCGAGTTGGAGGACCCTTTGAGATCAGGCTGGCAGCTTGTATTCGTTGACCGGGAAAATGACGTCCTTCTTCTTGGGGACGATCCCTGGCCGGAATTTGTCAACAGTGTGTGGTGTATCAAAATCCTTTCACCCGAGGAAGTGCAGGAGATGGGCAAACGCGGCCTAGAGCTCTTGAACTCAGTCCCGATTCAGAGGCTCTCAAATGGCAGTTGTGATAACTACGCCAATAGACAGGAATCATCCAGAAATTTGAGTACCGGGATAACTTCTGTCGGGTCTCTCGAGTACTGA | 2841 | 46.99 | MKSAIEELCMWGVWVERIRCGRVVVAFFEDTLVLQICRSISFCLLDLTEMRLSTAGFSPQAPEGEGRVLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAISTNREVDAHIPSYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTAQEQKEPYLPAELGAPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFIIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGIGDLDSTRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPTGFPSFHGLKEDDLGLNSQLMWLRGDGLDRGIQPLNFPGIGVAPWMQPRLDASMVGLQPEIYQAMAAAALQEMRTVDPAKVQAASLLQFQQTQNLPNRPTFMPPQMLQPQPQPQPPQTFLQGDENQHLSHSQAQSQPTVLQQEIKHQTFNNQQQQQQQQQQQQQPQQQVFDHQQIPSPISTMSQFSSASQSQSQSLQTIPPLCRQQSFSDSNANHVTSPIISPLHSLLGSFPQDESSQLLNLPRTNPMIHSSTWPSKRAAVDPLLSSGNSQFVLSQGENMGTTQTNISQNAILLPPFPGRECSLDQGNADPQSNLLFGVNIEPSSLLMQNGMPNLRGICSDSDSTAIPFSSNYVNTAGNNFSASPTGTGTPSNCIEDSGFLQSPENTGQVYKSGSFGRSLDISKFSSYHQLRSELAHMFGLEGELEDPLRSGWQLVFVDRENDVLLLGDDPWPEFVNSVWCIKILSPEEVQEMGKRGLELLNSVPIQRLSNGSCDNYANRQESSRNLSTGITSVGSLEY | 946 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 37937835 | 37943515 | - | ClCG01G024910.2 | Cla01g02432 | 266021 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla01g02432 | 946 | Gene3D | - | 340 | 412 | - | - | |
| Cla01g02432 | 946 | MobiDBLite | consensus disorder prediction | 544 | 598 | - | - | |
| Cla01g02432 | 946 | PANTHER | AUXIN RESPONSE FACTOR 4-RELATED | 50 | 924 | IPR044835 | GO:0003677|GO:0006355|GO:0009725 | |
| Cla01g02432 | 946 | SMART | B3_2 | 176 | 278 | IPR003340 | GO:0003677 | |
| Cla01g02432 | 946 | Pfam | Auxin response factor | 302 | 385 | IPR010525 | GO:0003677|GO:0005634|GO:0006355|GO:0009725 | |
| Cla01g02432 | 946 | Pfam | B3 DNA binding domain | 176 | 277 | IPR003340 | GO:0003677 | |
| Cla01g02432 | 946 | Gene3D | - | 809 | 901 | - | - | |
| Cla01g02432 | 946 | ProSiteProfiles | PB1 domain profile. | 812 | 896 | IPR000270 | GO:0005515 | |
| Cla01g02432 | 946 | PANTHER | AUXIN RESPONSE FACTOR 6 | 50 | 924 | - | - | |
| Cla01g02432 | 946 | SUPERFAMILY | CAD & PB1 domains | 826 | 887 | - | - | |
| Cla01g02432 | 946 | SUPERFAMILY | DNA-binding pseudobarrel domain | 161 | 305 | IPR015300 | - | |
| Cla01g02432 | 946 | MobiDBLite | consensus disorder prediction | 522 | 598 | - | - | |
| Cla01g02432 | 946 | MobiDBLite | consensus disorder prediction | 529 | 543 | - | - | |
| Cla01g02432 | 946 | MobiDBLite | consensus disorder prediction | 606 | 625 | - | - | |
| Cla01g02432 | 946 | CDD | B3_DNA | 175 | 276 | IPR003340 | GO:0003677 | |
| Cla01g02432 | 946 | Gene3D | - | 174 | 277 | IPR015300 | - | |
| Cla01g02432 | 946 | ProSiteProfiles | B3 DNA-binding domain profile. | 176 | 278 | IPR003340 | GO:0003677 |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cla01g02432 | Cla03g00607 | CCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla01g02432 | Cla-Chr1:37937835 | Cla11g00124 | Cla-Chr11:1594840 | 4.35E-07 | dispersed | |
| Cla01g00816 | Cla-Chr1:9602547 | Cla01g02432 | Cla-Chr1:37937835 | 1.23E-90 | transposed | |
| Cla01g02284 | Cla-Chr1:36703407 | Cla01g02432 | Cla-Chr1:37937835 | 5.25E-104 | transposed | |
| Cla02g02048 | Cla-Chr2:35525066 | Cla01g02432 | Cla-Chr1:37937835 | 3.04E-17 | transposed | |
| Cla05g01890 | Cla-Chr5:30764085 | Cla01g02432 | Cla-Chr1:37937835 | 3.37E-30 | transposed | |
| Cla09g00886 | Cla-Chr9:9118977 | Cla01g02432 | Cla-Chr1:37937835 | 5.63E-14 | transposed | |
| Cla11g00028 | Cla-Chr11:389045 | Cla01g02432 | Cla-Chr1:37937835 | 2.79E-10 | transposed | |
| Cla11g01119 | Cla-Chr11:22729888 | Cla01g02432 | Cla-Chr1:37937835 | 1.09E-28 | transposed | |
| Cla01g02432 | Cla-Chr1:37937835 | Cla03g00607 | Cla-Chr3:7181134 | 0 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 60538 | PF02362 | B3 | 1.60E-21 | CL0405 | Cla | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla01g02432 | - | - | csv:101210406 | 1651.34 |