Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g02453 ATGGCGCTTGTCATGCACAAAGATTCATCGAACAAACAAATGGATTCAAGCAAATACGTACGGTATACACCCGAGCAAGTTGAGGCATTAGAGAGAGTTTATGCAGAATGTCCGAAGCCTAGTTCTCTCAGAAGGCAGCAGCTCATTAGAGAGTGCCCTATCCTTTCTAACATTGAGCCTAAGCAGATCAAAGTTTGGTTTCAAAATCGCAGGAAACCTGTACTTTGCTTTCTTGTTTGTTTGTTTTTGCCATCTGCAATATTGTCAAAAGTTTTGGTTTGGGCTCTGAGCTTGTGGTACATCTGGAGGAAGGAATCATCTCGCCTCCAGAGCGTAAATAGAAAGTTGTCTGCGATGAACAAATTGTTGATGGAGGAGAATGACCGTTTACAGAAGCAGGTGTCTCATTTGGTGTATGAGAATGGCTATATGCGCCAGCAACTGCATAATGCATCTGGGACGACTACAGACAATAGCTGTGAGTCTGTAGTCATGAGCGGTCAGCCTCAACAACAGCAAAACCCAAATCCTCAGCATTCCAATAGGGATGTTAACAACCCAGCTGGTCTTCTCGCGATAGCTGAGGAGACCCTGGCAGAGTTCCTTTCCAAGGCTACAGGAACTGCTGTCGACTGGGTCCAGATGATTGGGATGAAGCCTGGTCCGGATTCTATTGGAATCGTTGCTGTTTCCCGCAATTGCAGTGGCGTAGCAGCACGAGCCTGTGGTCTTGTTAGTCTAGAGCCAACAAAGGTTGCAGAAATTCTCAAAGATCGCCTTTCATGGTATCGTGACTGCCGCTGTCTTAATGTCTTAAGTGTAATTCCTACGGGAAATGGGGGAACAGTAGAGCTCATATATATGCAGACTTATGCTCCAACGACATTAGCAGCAGCACGTGACTTCTGGACTATGAGATATACAACAAGTTTAGAAGATGGCAGTCTAGTGGTTTGTGAGAGGTCATTATCTACTTCAAGTGGTGGTCCAGCAGGGCCTCCGCCATCTACTTTTGTAAGAGCTGAGATGCTTCCTAGTGGCTATTTAATACGAGCGTGCGAGGGTGGTGGATCTATTATTCACATTGTTGATCACATTGATTTGGATGTTTGGAGTGTCCCTGAAGTTCTTAGGCCACTTTATGAGTCATCCAAGATCCTTGCTCAGAAAATGACAATTGCTGCATTGCGTCACATTAGACAAATTGCTCAGGAGACTAATGGAGAAATTCAATGTACTGGTGGACGTCAACCAGCTGTACTGAGGACATTTAGTCAAAAACTTTGCAGGGGTTTTAACGATGCTGTCAACGGGTTTGCTGATGATGGTTGGTCACCTATGGGCAGTGATGGTGTGGAGGATGTGACAATTGTCATAAACTCATCAGCAAACAAGTTTCCTGGATCCCAGTACAACACGTCTTTGTATCCCTCTTTTGGCGGAGGAGTGATGTGTGCTAAAGCATCAATGTTGCTTCAGAATGTTCCCCCTGCTTTACTTGTTCGATTCCTGAGAGAGCATAGGTCTGAATGGGCTGATTATGGAGTTGATGCTTACTCTGCTGCAAGTTTAAAAGCCAGTCCGTATGCTGTTCCGTGTGCAAGGCCTGGTGGCTTCCCTAGCAGCCAAGTTATTTTGCCTCTTGCTCCTACTGTGGAGCACGAGGAGTTTTTGGAGGTGGTTCGGTTGGAGGGCCTTGCATTCTCTCCTGAAGATGTTGCTTTGGCTGGACGAGATATGTACTTATTGCAGCTCTGTAGTGGTGTTGATGAGAATGCAGTTGGAGCTTGTGCTCAGCTTGTGTTTGCACCTATAGATGAATCTTTTGCTGATGATGCTCCCCTACTTCCTTCAGGGTTTCGTGTCATACCGCTGGATCCGAAAACGGATGAGCCTACTGCTGCTAGAACACTGGATTTGGCCTCTACACTTGAAGTTGGTGCCAATGCTGCACGATCTGCTGGTGAAACTGATTTGAGCAGCTACAACCTTCGTTCAGTCTTGACTATTGCTTTCCAGTTCACCTTTGAGAATCACTTACAGGAAAATGTGGCTGCTATGGCTCGACAATATGTTCGTAGTGTTGTTGGGTCAGTTCAGAGGGTTGCCATGGCCATTTCCCCTTCGCGGTTGAGTTCCAGTACGGGACTTAAGCCTCTTCCTGGTTCTCCTGAAGCTCTCACTTTGGCTCGATGGATTTGCCGAAGCTACAGGATCCATGTTGGAGTTGAACTCCTTCAAACCGATTCCCAGTCTGGGGATGCCATGTTGAAGAAGCTCTGGCACCACTCCGACGCAATCATGTGTTGCTCTGTTAAAACCAACGCATCTGCTGTGTTCACCTTTGCTAACCAGGCTGGTCTGGACATGCTTGAAACCACTCTTGTTGGCCTGCAAGATATAATGCTGGACAAAATTCTCGATGAGGCGGGTCGGAAGATTCTTTGCTCTGAGTTCCCCAAAATAATGCAGCAGGGGTTCGCAAATCTTCCCTCGGGCATTTGCATATCCAGCATGGGCCGTCCCATTTCTTATGAGCAAGCCATTGCCTGGAAGGTTCTAAATGATGATGATTCCAATCACTGTCTAGCTTTCATGTTCATCAACTGGTCCTTTGTTTGA 2622 46.49 MALVMHKDSSNKQMDSSKYVRYTPEQVEALERVYAECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRKPVLCFLVCLFLPSAILSKVLVWALSLWYIWRKESSRLQSVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQLHNASGTTTDNSCESVVMSGQPQQQQNPNPQHSNRDVNNPAGLLAIAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPTKVAEILKDRLSWYRDCRCLNVLSVIPTGNGGTVELIYMQTYAPTTLAAARDFWTMRYTTSLEDGSLVVCERSLSTSSGGPAGPPPSTFVRAEMLPSGYLIRACEGGGSIIHIVDHIDLDVWSVPEVLRPLYESSKILAQKMTIAALRHIRQIAQETNGEIQCTGGRQPAVLRTFSQKLCRGFNDAVNGFADDGWSPMGSDGVEDVTIVINSSANKFPGSQYNTSLYPSFGGGVMCAKASMLLQNVPPALLVRFLREHRSEWADYGVDAYSAASLKASPYAVPCARPGGFPSSQVILPLAPTVEHEEFLEVVRLEGLAFSPEDVALAGRDMYLLQLCSGVDENAVGACAQLVFAPIDESFADDAPLLPSGFRVIPLDPKTDEPTAARTLDLASTLEVGANAARSAGETDLSSYNLRSVLTIAFQFTFENHLQENVAAMARQYVRSVVGSVQRVAMAISPSRLSSSTGLKPLPGSPEALTLARWICRSYRIHVGVELLQTDSQSGDAMLKKLWHHSDAIMCCSVKTNASAVFTFANQAGLDMLETTLVGLQDIMLDKILDEAGRKILCSEFPKIMQQGFANLPSGICISSMGRPISYEQAIAWKVLNDDDSNHCLAFMFINWSFV 873
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 38229879 38235888 - ClCG01G025120.2 Cla01g02453 266042
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g02453 873 ProSiteProfiles START domain profile. 183 411 IPR002913 GO:0008289
Cla01g02453 873 Coils Coil 109 133 - -
Cla01g02453 873 MobiDBLite consensus disorder prediction 150 185 - -
Cla01g02453 873 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 6 71 - -
Cla01g02453 873 Pfam Homeodomain 18 71 IPR001356 GO:0003677
Cla01g02453 873 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 103 873 IPR044830 GO:0003700
Cla01g02453 873 CDD START_ArGLABRA2_like 187 403 - -
Cla01g02453 873 SUPERFAMILY Bet v1-like 193 404 - -
Cla01g02453 873 Pfam MEKHLA domain 728 872 IPR013978 -
Cla01g02453 873 ProSiteProfiles 'Homeobox' domain profile. 13 71 IPR001356 GO:0003677
Cla01g02453 873 CDD homeodomain 18 72 IPR001356 GO:0003677
Cla01g02453 873 Pfam START domain 193 400 IPR002913 GO:0008289
Cla01g02453 873 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 103 873 - -
Cla01g02453 873 SUPERFAMILY Homeodomain-like 17 72 IPR009057 -
Cla01g02453 873 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 6 71 IPR044830 GO:0003700
Cla01g02453 873 Gene3D - 226 411 IPR023393 -
Cla01g02453 873 SMART HOX_1 15 77 IPR001356 GO:0003677
Cla01g02453 873 SMART START_1 192 402 IPR002913 GO:0008289
Cla01g02453 873 Gene3D - 9 73 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02453 Cla-Chr1:38229879 Cla01g02157 Cla-Chr1:35717070 2.73E-07 dispersed
Cla01g01351 Cla-Chr1:27076751 Cla01g02453 Cla-Chr1:38229879 0 transposed
Cla02g02065 Cla-Chr2:35684957 Cla01g02453 Cla-Chr1:38229879 0 transposed
Cla09g00009 Cla-Chr9:127599 Cla01g02453 Cla-Chr1:38229879 0 transposed
Cla11g01479 Cla-Chr11:28421149 Cla01g02453 Cla-Chr1:38229879 0 transposed
Cla01g02453 Cla-Chr1:38229879 Cla03g00588 Cla-Chr3:6693553 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60540 PF01852 START 1.20E-48 CL0209 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g02453 K09338 - csv:101210154 1608.96