Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla01g02454 | ATGATGAAGCCCGTAAAATCATGGGCCAATCACACGAATGTGGAAGACATGACTATGAGATTTGACTTCATTTTTGTACTGGAGAACAAGCTTGGGGGTATAAGTCCAATATGGAAGCCTTCATACAACATGAGCATTGAACTGGATTTTCTTGGGATATTTGGATTGTCATATAGCTTTGTAAAGATTAGGCCCTTAGTGTTCTTTCAATTAACGGAAGTCAAAGAGCAGACTGTTATAAGATTAAACCCTGATTTATTAACCATTCAGGTTTCATTTGGTGTGCACTGCAATCCCATGACTTCTTCTATCCATGATTATTCTGGACAGTATAATGGTAAAGCAATTGAAAAGACTCCACTAACCTTGAATCAAGATTCATGTGCTTGGCATCTTCATTTGAACTCTTGCACATACTGCTTCACTTATTGGATGGAGAAGAATCGAATTCCTTTGCTGAATGCTATCATTAGTGTTTACCATCATAAAAGAAAGACCCTTTTCAAAGTCTTGCACAATTTGAGGGATCAATCAATAAATTTTGCCTCTGAAACTGATTGTCCAGATAATGGTGAGGCTGATGAGCAGCAAAAGTACTCTGGATCTCAGAATCATTCTTCATCAATCGTAAATGGACTAAGTCAACCCACCATCGTAACTCCAAATCAGTATGTAACATCTCCTCAAGTTGGAGCAGGACATGCTATGGCACCCCCTGCTTATCCATATCCAGATCCTTATTACAGAAGCATCTTCACTCCCTATGATGCTCAACCATATCCTCCACAGCCCTATGGTGGGCAACCGATGGTCCATCTTCAATTAATGGGAATTCAGCAAGCTGGGGTTCCTTTGCCAACAGATGCAGTTGAGGAGCCTGTTTTTGTCAATGCTAAACAGTATCATGGCATTTTACGACGTCGACAGTCCCGCGCAAAAGCTGAATCCGAAAATAAAGCCCTAAAGTCTAGGAAGCCATATTTGCATGAATCTCGACACCTGCATGCATTAAGGAGAGCTAGAGGTTGTGGTGGACGGTTTCTCAAGTCAAATAAAAATGAGAATCATCAAAATGAAGTGGCATCAGGTGATAAGTCACAGCCAAATATAAATCTGAATTCTGATAGAAGCGATCTTGCTTCGTCAGAGAACTGA | 1155 | 40.43 | MMKPVKSWANHTNVEDMTMRFDFIFVLENKLGGISPIWKPSYNMSIELDFLGIFGLSYSFVKIRPLVFFQLTEVKEQTVIRLNPDLLTIQVSFGVHCNPMTSSIHDYSGQYNGKAIEKTPLTLNQDSCAWHLHLNSCTYCFTYWMEKNRIPLLNAIISVYHHKRKTLFKVLHNLRDQSINFASETDCPDNGEADEQQKYSGSQNHSSSIVNGLSQPTIVTPNQYVTSPQVGAGHAMAPPAYPYPDPYYRSIFTPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKALKSRKPYLHESRHLHALRRARGCGGRFLKSNKNENHQNEVASGDKSQPNINLNSDRSDLASSEN | 384 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 38244533 | 38251634 | - | ClCG01G025130.1 | Cla01g02454 | 266043 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla01g02454 | 384 | ProSiteProfiles | NF-YA/HAP2 family profile. | 290 | 350 | IPR001289 | GO:0003700|GO:0006355 | |
Cla01g02454 | 384 | Gene3D | - | 290 | 351 | - | - | |
Cla01g02454 | 384 | PRINTS | CCAAT-binding transcription factor subunit B signature | 293 | 315 | IPR001289 | GO:0003700|GO:0006355 | |
Cla01g02454 | 384 | PRINTS | CCAAT-binding transcription factor subunit B signature | 324 | 347 | IPR001289 | GO:0003700|GO:0006355 | |
Cla01g02454 | 384 | MobiDBLite | consensus disorder prediction | 195 | 212 | - | - | |
Cla01g02454 | 384 | MobiDBLite | consensus disorder prediction | 350 | 384 | - | - | |
Cla01g02454 | 384 | ProSitePatterns | NF-YA/HAP2 subunit signature. | 295 | 315 | IPR018362 | GO:0003677|GO:0016602 | |
Cla01g02454 | 384 | PANTHER | TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED | 183 | 365 | IPR001289 | GO:0003700|GO:0006355 | |
Cla01g02454 | 384 | MobiDBLite | consensus disorder prediction | 183 | 212 | - | - | |
Cla01g02454 | 384 | PANTHER | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-7 | 183 | 365 | - | - | |
Cla01g02454 | 384 | Pfam | CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B | 292 | 347 | IPR001289 | GO:0003700|GO:0006355 | |
Cla01g02454 | 384 | SMART | cbf3 | 289 | 350 | IPR001289 | GO:0003700|GO:0006355 | |
Cla01g02454 | 384 | MobiDBLite | consensus disorder prediction | 345 | 384 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla01g02454 | Cla-Chr1:38244533 | Cla02g02245 | Cla-Chr2:37564957 | 2.28E-36 | dispersed | |
Cla01g02454 | Cla-Chr1:38244533 | Cla09g00377 | Cla-Chr9:3676310 | 1.07E-37 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
60541 | PF02045 | CBFB_NFYA | 1.20E-25 | No_clan | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla01g02454 | K08064 | - | csv:101205549 | 343.584 |