Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g02454 ATGATGAAGCCCGTAAAATCATGGGCCAATCACACGAATGTGGAAGACATGACTATGAGATTTGACTTCATTTTTGTACTGGAGAACAAGCTTGGGGGTATAAGTCCAATATGGAAGCCTTCATACAACATGAGCATTGAACTGGATTTTCTTGGGATATTTGGATTGTCATATAGCTTTGTAAAGATTAGGCCCTTAGTGTTCTTTCAATTAACGGAAGTCAAAGAGCAGACTGTTATAAGATTAAACCCTGATTTATTAACCATTCAGGTTTCATTTGGTGTGCACTGCAATCCCATGACTTCTTCTATCCATGATTATTCTGGACAGTATAATGGTAAAGCAATTGAAAAGACTCCACTAACCTTGAATCAAGATTCATGTGCTTGGCATCTTCATTTGAACTCTTGCACATACTGCTTCACTTATTGGATGGAGAAGAATCGAATTCCTTTGCTGAATGCTATCATTAGTGTTTACCATCATAAAAGAAAGACCCTTTTCAAAGTCTTGCACAATTTGAGGGATCAATCAATAAATTTTGCCTCTGAAACTGATTGTCCAGATAATGGTGAGGCTGATGAGCAGCAAAAGTACTCTGGATCTCAGAATCATTCTTCATCAATCGTAAATGGACTAAGTCAACCCACCATCGTAACTCCAAATCAGTATGTAACATCTCCTCAAGTTGGAGCAGGACATGCTATGGCACCCCCTGCTTATCCATATCCAGATCCTTATTACAGAAGCATCTTCACTCCCTATGATGCTCAACCATATCCTCCACAGCCCTATGGTGGGCAACCGATGGTCCATCTTCAATTAATGGGAATTCAGCAAGCTGGGGTTCCTTTGCCAACAGATGCAGTTGAGGAGCCTGTTTTTGTCAATGCTAAACAGTATCATGGCATTTTACGACGTCGACAGTCCCGCGCAAAAGCTGAATCCGAAAATAAAGCCCTAAAGTCTAGGAAGCCATATTTGCATGAATCTCGACACCTGCATGCATTAAGGAGAGCTAGAGGTTGTGGTGGACGGTTTCTCAAGTCAAATAAAAATGAGAATCATCAAAATGAAGTGGCATCAGGTGATAAGTCACAGCCAAATATAAATCTGAATTCTGATAGAAGCGATCTTGCTTCGTCAGAGAACTGA 1155 40.43 MMKPVKSWANHTNVEDMTMRFDFIFVLENKLGGISPIWKPSYNMSIELDFLGIFGLSYSFVKIRPLVFFQLTEVKEQTVIRLNPDLLTIQVSFGVHCNPMTSSIHDYSGQYNGKAIEKTPLTLNQDSCAWHLHLNSCTYCFTYWMEKNRIPLLNAIISVYHHKRKTLFKVLHNLRDQSINFASETDCPDNGEADEQQKYSGSQNHSSSIVNGLSQPTIVTPNQYVTSPQVGAGHAMAPPAYPYPDPYYRSIFTPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKALKSRKPYLHESRHLHALRRARGCGGRFLKSNKNENHQNEVASGDKSQPNINLNSDRSDLASSEN 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 38244533 38251634 - ClCG01G025130.1 Cla01g02454 266043
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g02454 384 ProSiteProfiles NF-YA/HAP2 family profile. 290 350 IPR001289 GO:0003700|GO:0006355
Cla01g02454 384 Gene3D - 290 351 - -
Cla01g02454 384 PRINTS CCAAT-binding transcription factor subunit B signature 293 315 IPR001289 GO:0003700|GO:0006355
Cla01g02454 384 PRINTS CCAAT-binding transcription factor subunit B signature 324 347 IPR001289 GO:0003700|GO:0006355
Cla01g02454 384 MobiDBLite consensus disorder prediction 195 212 - -
Cla01g02454 384 MobiDBLite consensus disorder prediction 350 384 - -
Cla01g02454 384 ProSitePatterns NF-YA/HAP2 subunit signature. 295 315 IPR018362 GO:0003677|GO:0016602
Cla01g02454 384 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 183 365 IPR001289 GO:0003700|GO:0006355
Cla01g02454 384 MobiDBLite consensus disorder prediction 183 212 - -
Cla01g02454 384 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-7 183 365 - -
Cla01g02454 384 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 292 347 IPR001289 GO:0003700|GO:0006355
Cla01g02454 384 SMART cbf3 289 350 IPR001289 GO:0003700|GO:0006355
Cla01g02454 384 MobiDBLite consensus disorder prediction 345 384 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02454 Cla-Chr1:38244533 Cla02g02245 Cla-Chr2:37564957 2.28E-36 dispersed
Cla01g02454 Cla-Chr1:38244533 Cla09g00377 Cla-Chr9:3676310 1.07E-37 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60541 PF02045 CBFB_NFYA 1.20E-25 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g02454 K08064 - csv:101205549 343.584