Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g02454 ATGATGAAGCCCGTAAAATCATGGGCCAATCACACGAATGTGGAAGACATGACTATGAGATTTGACTTCATTTTTGTACTGGAGAACAAGCTTGGGGGTATAAGTCCAATATGGAAGCCTTCATACAACATGAGCATTGAACTGGATTTTCTTGGGATATTTGGATTGTCATATAGCTTTGTAAAGATTAGGCCCTTAGTGTTCTTTCAATTAACGGAAGTCAAAGAGCAGACTGTTATAAGATTAAACCCTGATTTATTAACCATTCAGGTTTCATTTGGTGTGCACTGCAATCCCATGACTTCTTCTATCCATGATTATTCTGGACAGTATAATGGTAAAGCAATTGAAAAGACTCCACTAACCTTGAATCAAGATTCATGTGCTTGGCATCTTCATTTGAACTCTTGCACATACTGCTTCACTTATTGGATGGAGAAGAATCGAATTCCTTTGCTGAATGCTATCATTAGTGTTTACCATCATAAAAGAAAGACCCTTTTCAAAGTCTTGCACAATTTGAGGGATCAATCAATAAATTTTGCCTCTGAAACTGATTGTCCAGATAATGGTGAGGCTGATGAGCAGCAAAAGTACTCTGGATCTCAGAATCATTCTTCATCAATCGTAAATGGACTAAGTCAACCCACCATCGTAACTCCAAATCAGTATGTAACATCTCCTCAAGTTGGAGCAGGACATGCTATGGCACCCCCTGCTTATCCATATCCAGATCCTTATTACAGAAGCATCTTCACTCCCTATGATGCTCAACCATATCCTCCACAGCCCTATGGTGGGCAACCGATGGTCCATCTTCAATTAATGGGAATTCAGCAAGCTGGGGTTCCTTTGCCAACAGATGCAGTTGAGGAGCCTGTTTTTGTCAATGCTAAACAGTATCATGGCATTTTACGACGTCGACAGTCCCGCGCAAAAGCTGAATCCGAAAATAAAGCCCTAAAGTCTAGGAAGCCATATTTGCATGAATCTCGACACCTGCATGCATTAAGGAGAGCTAGAGGTTGTGGTGGACGGTTTCTCAAGTCAAATAAAAATGAGAATCATCAAAATGAAGTGGCATCAGGTGATAAGTCACAGCCAAATATAAATCTGAATTCTGATAGAAGCGATCTTGCTTCGTCAGAGAACTGA 1155 40.43 MMKPVKSWANHTNVEDMTMRFDFIFVLENKLGGISPIWKPSYNMSIELDFLGIFGLSYSFVKIRPLVFFQLTEVKEQTVIRLNPDLLTIQVSFGVHCNPMTSSIHDYSGQYNGKAIEKTPLTLNQDSCAWHLHLNSCTYCFTYWMEKNRIPLLNAIISVYHHKRKTLFKVLHNLRDQSINFASETDCPDNGEADEQQKYSGSQNHSSSIVNGLSQPTIVTPNQYVTSPQVGAGHAMAPPAYPYPDPYYRSIFTPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKALKSRKPYLHESRHLHALRRARGCGGRFLKSNKNENHQNEVASGDKSQPNINLNSDRSDLASSEN 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 38244533 38251634 - ClCG01G025130.1 Cla01g02454 266043

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g02454 384 ProSiteProfiles NF-YA/HAP2 family profile. 290 350 IPR001289 GO:0003700|GO:0006355
Cla01g02454 384 Gene3D - 290 351 - -
Cla01g02454 384 PRINTS CCAAT-binding transcription factor subunit B signature 293 315 IPR001289 GO:0003700|GO:0006355
Cla01g02454 384 PRINTS CCAAT-binding transcription factor subunit B signature 324 347 IPR001289 GO:0003700|GO:0006355
Cla01g02454 384 MobiDBLite consensus disorder prediction 195 212 - -
Cla01g02454 384 MobiDBLite consensus disorder prediction 350 384 - -
Cla01g02454 384 ProSitePatterns NF-YA/HAP2 subunit signature. 295 315 IPR018362 GO:0003677|GO:0016602
Cla01g02454 384 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 183 365 IPR001289 GO:0003700|GO:0006355
Cla01g02454 384 MobiDBLite consensus disorder prediction 183 212 - -
Cla01g02454 384 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-7 183 365 - -
Cla01g02454 384 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 292 347 IPR001289 GO:0003700|GO:0006355
Cla01g02454 384 SMART cbf3 289 350 IPR001289 GO:0003700|GO:0006355
Cla01g02454 384 MobiDBLite consensus disorder prediction 345 384 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g02454 K08064 NFYA, HAP2; nuclear transcription factor Y, alpha - csv:101205549 343.584
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02454 Cla-Chr1:38244533 Cla02g02245 Cla-Chr2:37564957 2.28E-36 dispersed
Cla01g02454 Cla-Chr1:38244533 Cla09g00377 Cla-Chr9:3676310 1.07E-37 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla02g02245 CCT,ECH 86 339 CCAAT-HAP2 Transcription Factor Family AT5G12840 51.2 8.7e-54 207.6
Cla03g01271 CCT,ECH 58 234 CCAAT-HAP2 Transcription Factor Family AT3G20910 59.8 6.9e-44 174.9
Cla01g02454 . 215 382 CCAAT-HAP2 Transcription Factor Family AT1G30500 58.0 1.5e-44 176.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004501 2 1 2 2 2 1 2 1 1 1 1 2 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60541 PF02045 CBFB_NFYA 1.20E-25 No_clan Cla TF