Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g02455 ATGAATAATCGCACACTGGAACTTGGGAGGCCTGGCTCAGGTGGGCTTTTCTTGTCTTGTTCAGGCAAAAGAAGATTAAGGGACCTATTGCTTCTAAAGGATAATCGCTTTTGTGCAGATTGTCGCGCTGCAGATCCTAAATGGGCGTCAGCAAATATTGGAGTTTTTATATGCTTGAAATGTTGTGGTGTTCACAGAAGCCTCGGTTCACATATATCAAAGGTGTTATCAGTGACGTTGGATGAATGGAATGATGATGAAATTGACGCCATGATAGAAGTTGGAGGAAATTCTTCTGCAAATGCTATTTATGAAGCCTTTATTCCTGAGGGATATTCAAAACCTGGACCAGATGCTACCCATGAACAACGTTCAAAATTTATTCGGTCCAAATATGAACTTCAAGAATTTCTGAAACCGAGCTTGAGAATTTTATCATCCAACTCTGACAAAAGCAATATCCAAGCAAGCTTTTCTTCAAAGATCATGAACAGTTTTCGTTCAAATCCTTCACAAAAATCACTATCGCAGGAAGGTATGGTAGAGTATATTGGATTATTGAAGGTCAAAGTGATTAAAGGAACAAACTTAGCTATCAGGGATATGATGTCTAGCGATCCTTATGTAGTCATGACTCTTGGACAACAGACTGTCCAGACAAGTGTAGTCAGGAGCAACTTGAATCCTGTGTGGAATGAGGAACTGACGCTATCTGTACCTCAAGGTTTTGGAACCATAAAGTTGCAAGTATACGATTATGACACATTTTCAGCAGATGACATAATGGGAGAAGCAGAGATTGATCTCCAGCCCTTGATAACATCCGCCATGGCATTTGGAGATGCTGGAATGTTTTCAAACATGCAAATTGGAAAATGGCTGAAATCGCATGATAACGCTCTCATAGCCGATAGCACCGTTAATATTGTTGATGGGAAGGTGAAGCAAGAGATATCACTCAAGCTTCAGAATGTGGAATCAGGAGAACTAGATCTAGAGCTTGAATGGATGGCTCTTGAACAATAG 1026 40.35 MNNRTLELGRPGSGGLFLSCSGKRRLRDLLLLKDNRFCADCRAADPKWASANIGVFICLKCCGVHRSLGSHISKVLSVTLDEWNDDEIDAMIEVGGNSSANAIYEAFIPEGYSKPGPDATHEQRSKFIRSKYELQEFLKPSLRILSSNSDKSNIQASFSSKIMNSFRSNPSQKSLSQEGMVEYIGLLKVKVIKGTNLAIRDMMSSDPYVVMTLGQQTVQTSVVRSNLNPVWNEELTLSVPQGFGTIKLQVYDYDTFSADDIMGEAEIDLQPLITSAMAFGDAGMFSNMQIGKWLKSHDNALIADSTVNIVDGKVKQEISLKLQNVESGELDLELEWMALEQ 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 38256076 38261143 + ClCG01G025140.1 Cla01g02455 266044
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g02455 341 ProSiteProfiles C2 domain profile. 167 282 IPR000008 -
Cla01g02455 341 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 19 341 IPR044518 GO:0005096|GO:0005543
Cla01g02455 341 SMART arf_gap_3 23 145 IPR001164 GO:0005096
Cla01g02455 341 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD10 19 341 - -
Cla01g02455 341 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 185 329 IPR035892 -
Cla01g02455 341 CDD ArfGap 35 132 - -
Cla01g02455 341 Gene3D C2 domain 182 341 IPR035892 -
Cla01g02455 341 Gene3D Arf GTPase activating protein 19 143 IPR038508 -
Cla01g02455 341 PRINTS HIV Rev interacting protein signature 35 54 IPR001164 GO:0005096
Cla01g02455 341 PRINTS HIV Rev interacting protein signature 54 71 IPR001164 GO:0005096
Cla01g02455 341 PRINTS HIV Rev interacting protein signature 75 96 IPR001164 GO:0005096
Cla01g02455 341 CDD C2_ArfGAP 184 328 - -
Cla01g02455 341 Pfam Putative GTPase activating protein for Arf 24 139 IPR001164 GO:0005096
Cla01g02455 341 ProSiteProfiles ARF GTPase-activating proteins domain profile. 23 151 IPR001164 GO:0005096
Cla01g02455 341 SMART C2_3c 186 281 IPR000008 -
Cla01g02455 341 SUPERFAMILY ArfGap/RecO-like zinc finger 23 140 IPR037278 -
Cla01g02455 341 Pfam C2 domain 186 275 IPR000008 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla01g02455 Cla03g00588 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02455 Cla-Chr1:38256076 Cla05g02675 Cla-Chr5:37929342 2.84E-109 dispersed
Cla01g02455 Cla-Chr1:38256076 Cla03g00588 Cla-Chr3:6693553 1.03E-158 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g02455 K12486 - csv:101218116 629.017