Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla01g02461 | ATGAAGACTGCAAGTCCTTCCCAACAGGAAATATTATTAAATGAGTTGAACAAAAGGAAATCAAAGCGAGTAAAAATCAAGCTCCCCAAAGAAGCAAAGGAAGAAAATCACAAAACGATCAATAACAACAACGAGGATGAACGAGAGGAGAATTTGGAAGATGAGGGAGGCTCGACACAAATAAAACAACGAGAAGTTATTTATGGATCTCATCTAGTACAAGGCAAAATGAATCATGGAATGGAAGACTATATCGTTACCGAAGAACGACATGTCGACAACCACATGCTGGGACTATTTGCAATATTTGATGGCCACTCCGGTCGCGATGTCACAGAGTACTTGCAGAGCCATCTGTTTGATAACATCTTAAGCCAGTCTGATTTCTGGGAAGACCCTGAAGGAGCAATCAGGAGAGCATATAAAGCAACAGATGAGGAGATTTTAGCTAAAAAAGTGGGAAAGAGAGGAGGTTCAACAGCAGTTACAGCTATACTAATAGATGGGCAGAAGCTAATCGTCGCACACGTAGGCGACTCACGGGCGGTGATATGCAGGAATGGCTCAGCAAAACCGATTACGGTCGATCACGAACCAGAGGAGGAGAAGGAGCTTGTTGAGAGCCGAGGTGGATTTGTTGTACAAATGCCAGGAAGTGTGCCACGGGTGGATGGTCAGCTAGCAATGTCAAGGGCATTTGGTGATGCAAGGCTGAAAGAACACATTACTTCAGAACCAGATATCAGGATCCTCACAATTGACAATGAGACTGAGTTCACCATTTTGGCCAGTGATGGCCTCTGGAAGGTAATGTCAAACCAGGAGGCTTGTGATTGCATCAGAGAAATGGGAATGGATCCTCAAAAGGCTTCAGAGGAATTGATTAAAGAGGCATTGTCTAAAATGAGCTACGATGACATTTCCTGCGTTGTAGTTACCTTCCACTGA | 948 | 43.88 | MKTASPSQQEILLNELNKRKSKRVKIKLPKEAKEENHKTINNNNEDEREENLEDEGGSTQIKQREVIYGSHLVQGKMNHGMEDYIVTEERHVDNHMLGLFAIFDGHSGRDVTEYLQSHLFDNILSQSDFWEDPEGAIRRAYKATDEEILAKKVGKRGGSTAVTAILIDGQKLIVAHVGDSRAVICRNGSAKPITVDHEPEEEKELVESRGGFVVQMPGSVPRVDGQLAMSRAFGDARLKEHITSEPDIRILTIDNETEFTILASDGLWKVMSNQEACDCIREMGMDPQKASEELIKEALSKMSYDDISCVVVTFH | 315 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 38303798 | 38309294 | - | ClCG01G025220.2 | Cla01g02461 | 266050 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla01g02461 | 315 | PANTHER | PROTEIN PHOSPHATASE 2C 28-RELATED | 25 | 315 | - | - | |
Cla01g02461 | 315 | CDD | PP2Cc | 66 | 314 | IPR001932 | - | |
Cla01g02461 | 315 | SMART | PP2C_4 | 63 | 312 | IPR001932 | - | |
Cla01g02461 | 315 | MobiDBLite | consensus disorder prediction | 27 | 46 | - | - | |
Cla01g02461 | 315 | Pfam | Protein phosphatase 2C | 78 | 306 | IPR001932 | - | |
Cla01g02461 | 315 | MobiDBLite | consensus disorder prediction | 23 | 59 | - | - | |
Cla01g02461 | 315 | ProSiteProfiles | PPM-type phosphatase domain profile. | 67 | 314 | IPR001932 | - | |
Cla01g02461 | 315 | PANTHER | ALPHABET, ISOFORM E-RELATED | 25 | 315 | - | - | |
Cla01g02461 | 315 | Coils | Coil | 30 | 50 | - | - | |
Cla01g02461 | 315 | SUPERFAMILY | PP2C-like | 66 | 315 | IPR036457 | - | |
Cla01g02461 | 315 | Gene3D | - | 45 | 315 | IPR036457 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla01g02461 | Cla-Chr1:38303798 | Cla11g01750 | Cla-Chr11:31111961 | 5.11E-108 | dispersed | |
Cla01g02461 | Cla-Chr1:38303798 | Cla07g00237 | Cla-Chr7:2622852 | 1.55E-109 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla01g02461 | - | - | csv:101211141 | 477.248 |