Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g02461 ATGAAGACTGCAAGTCCTTCCCAACAGGAAATATTATTAAATGAGTTGAACAAAAGGAAATCAAAGCGAGTAAAAATCAAGCTCCCCAAAGAAGCAAAGGAAGAAAATCACAAAACGATCAATAACAACAACGAGGATGAACGAGAGGAGAATTTGGAAGATGAGGGAGGCTCGACACAAATAAAACAACGAGAAGTTATTTATGGATCTCATCTAGTACAAGGCAAAATGAATCATGGAATGGAAGACTATATCGTTACCGAAGAACGACATGTCGACAACCACATGCTGGGACTATTTGCAATATTTGATGGCCACTCCGGTCGCGATGTCACAGAGTACTTGCAGAGCCATCTGTTTGATAACATCTTAAGCCAGTCTGATTTCTGGGAAGACCCTGAAGGAGCAATCAGGAGAGCATATAAAGCAACAGATGAGGAGATTTTAGCTAAAAAAGTGGGAAAGAGAGGAGGTTCAACAGCAGTTACAGCTATACTAATAGATGGGCAGAAGCTAATCGTCGCACACGTAGGCGACTCACGGGCGGTGATATGCAGGAATGGCTCAGCAAAACCGATTACGGTCGATCACGAACCAGAGGAGGAGAAGGAGCTTGTTGAGAGCCGAGGTGGATTTGTTGTACAAATGCCAGGAAGTGTGCCACGGGTGGATGGTCAGCTAGCAATGTCAAGGGCATTTGGTGATGCAAGGCTGAAAGAACACATTACTTCAGAACCAGATATCAGGATCCTCACAATTGACAATGAGACTGAGTTCACCATTTTGGCCAGTGATGGCCTCTGGAAGGTAATGTCAAACCAGGAGGCTTGTGATTGCATCAGAGAAATGGGAATGGATCCTCAAAAGGCTTCAGAGGAATTGATTAAAGAGGCATTGTCTAAAATGAGCTACGATGACATTTCCTGCGTTGTAGTTACCTTCCACTGA 948 43.88 MKTASPSQQEILLNELNKRKSKRVKIKLPKEAKEENHKTINNNNEDEREENLEDEGGSTQIKQREVIYGSHLVQGKMNHGMEDYIVTEERHVDNHMLGLFAIFDGHSGRDVTEYLQSHLFDNILSQSDFWEDPEGAIRRAYKATDEEILAKKVGKRGGSTAVTAILIDGQKLIVAHVGDSRAVICRNGSAKPITVDHEPEEEKELVESRGGFVVQMPGSVPRVDGQLAMSRAFGDARLKEHITSEPDIRILTIDNETEFTILASDGLWKVMSNQEACDCIREMGMDPQKASEELIKEALSKMSYDDISCVVVTFH 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 38303798 38309294 - ClCG01G025220.2 Cla01g02461 266050
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g02461 315 PANTHER PROTEIN PHOSPHATASE 2C 28-RELATED 25 315 - -
Cla01g02461 315 CDD PP2Cc 66 314 IPR001932 -
Cla01g02461 315 SMART PP2C_4 63 312 IPR001932 -
Cla01g02461 315 MobiDBLite consensus disorder prediction 27 46 - -
Cla01g02461 315 Pfam Protein phosphatase 2C 78 306 IPR001932 -
Cla01g02461 315 MobiDBLite consensus disorder prediction 23 59 - -
Cla01g02461 315 ProSiteProfiles PPM-type phosphatase domain profile. 67 314 IPR001932 -
Cla01g02461 315 PANTHER ALPHABET, ISOFORM E-RELATED 25 315 - -
Cla01g02461 315 Coils Coil 30 50 - -
Cla01g02461 315 SUPERFAMILY PP2C-like 66 315 IPR036457 -
Cla01g02461 315 Gene3D - 45 315 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02461 Cla-Chr1:38303798 Cla11g01750 Cla-Chr11:31111961 5.11E-108 dispersed
Cla01g02461 Cla-Chr1:38303798 Cla07g00237 Cla-Chr7:2622852 1.55E-109 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g02461 - - csv:101211141 477.248