Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g02462 ATGGGGAAGTTTCTAATCCGGAAATGCTTGATTTCGTTACTACTTCTGATAATTTCTGAGTATCTACAAACTGGAGATGCTGAATCCAATTCTCTTTTCATCAACTGCGGTTCAAGTTCAAATGAAACTGCCGATGGGAGGAAATGGATTGGCGACCTGACTTCAGAAGGGAACTTTTCTGTGGGCAATCTTGGAGCTACTATTAATGCCTCCATAGCCACTTTAAACGGCGATTCTGTCTTTGAGCCGCTGTATAAAACTGCTCGGATATTTACTAATTCCCTGAACTATACTTTTAAAGGTTTTCGGGGTAATCATGTTGTTCGGCTTCATTTCTGCCCCTTTCCTTTTGAGAATCTCAATGTGAACGAGTCATCATTTTCTGTCTCAGCCAATGGTCTTAGATTAGTTTCAGAGTTCAGCGTTCCCGATGAGATTGCATATAAGAATATGGAGTTTCAGCGTTCTGGGGTCAATTCAAGTTCATTCTCTTTGATTAAAGAGTTCATTATTTCTGTCAATTCAGAAGTACTTGTTCTTGAGTTTTCCCCTTCTGGGGGATCATTTGGGTTCGTTAATGCTATTGAAATTGTTCCCCTGGTGGATGAGCTTTTTGGAGGTTCCATTGATAAGGTGGGTGGAAGTGCTGTTAGTTTGAATGTGAGTGAAAGGGGAACTGAAACTATGTACAGGTTGAATGTTGGAGGGCCTGTGATCAAGCCCACTCAAGATTCAGATCTTTGGAGAATGTGGGAAGTGGACTCGAGTTATATGATTACAGCAAATGCTGGGTCTGAGATACATAACAGTTCTAATGTAACATATGCTTCCACGAATGACTCCATTGTAGCTCCTCTCCCTGTGTATGAAACAGCCAGAACGATGTCTGAGACTGAAGTGCTCGAGAAAAGGTTCAACATGTCGTGGAAATTCGAAATTCATCCCGGTTTTGAGTATTTGATCAGATTGCATTTCTGTGAGCTGCTGTATGAGAAGGCAAGAGAGAGGGTTTTCAAGATTTACATAAACAACAGGACTGCAGTTGAGAGTTTTGATGTGTTTGTACGAGCGGGGGGAATGAACAGAGCATATCATGTGGATTTCCTTGAACCAATATCGTCCAAAATCAACACCCTTTGGATTCAATTAGGCCCTGATACGGCTGCAGGTGCTGCAGGAACAGATGCTCTCTTGAATGGTCTGGAAATTTTCAAGTTGAGTCAAAATGGGAATCTTGCGTACATTGACAGGTTTAATGCCTTGGAGGAATCGACGGGAAACTCGAAATCTCAAATTCTTTGGATAGGCATTGGAGCAGGTTTAGCATCTGTTGTTTTCCTTGCTGTTATTACCATTCTCATCATCTATTTCTGCAGAATCCGGAGAAGGAATTTCACTAAGAAGAACTCTTCTAGGTGGAGAGCAGGATCCAGCCATGGGGCCACTGTCACCAACACTTATGCCAGAGGGTCCTCGGGGGGAGGCCAAAGTGTATTTGGGACCTTGCCATCTGTCAGAGTTGGCAAATGGTTTACCTTAGCAGAGATTCTTGCAGCGACAGATAACTTCGATGAAGCTCTGATGATCGGAGTTGGCGGTTTTGGTAAGGTCTACAGGGGGGAGATTGATGATGGTACACTTGTGGCAATCAAGAGAGCAAATCCACAGTCTCAGCAGGGACTTGCGGAGTTCGAGACCGAAATCGAAATGCTTTCTAAACTTAGGCATAGGCATCTGGTCTCCATGATTGGCTTTTGCGACGAGCAAAAGGAAATGATCTTGGTTTACGAATATATGGCGAATGGCACTCTTAGAAGCCATCTCTTTGGGAGTAATCTCCCACCTTTGACATGGAAGCAACGATTGGAAGTGTGCATTGGTGCAGCCAGGGGACTCCATTACCTTCACACAGGAGCTGAGAGAGGAATAATCCACAGAGATGTCAAGACGACCAACATACTCTTGGATGAAAACTTTGTTGCAAAAATGTCTGATTTTGGTCTTTCAAAAACAGGTCCTGCTTTGGATCATACCCATGTTAGTACTGCAGTTAAGGGCAGCTTCGGCTACCTTGATCCGGAGTATTTCAGGCGCCAGCAGCTGAGTGAAAAATCTGATGTCTATTCTTTTGGCGTGGTGTTGTTAGAAGTTGTTTGTGCACGAGCTGTTATAAACCCAAGTTTGCCCAAGGATCAGATAAATCTTGCAGAATGGGCAATGAAATGGCAACGCAAAAAGTTGCTGCACTCCATCATAGACCCACATCTCAAAGACAAATATTGTCCCGAGTCTCTGAAAACATTTGGAGAGATAGCAGAAAAATGCCTTGCTGATGAAGGGAAGATTCGTCCAACAATGGGGGAAGTTCTATGGCACCTAGAATATGCCCTCCAACTCCATGATGCTTGGATCCGCACTAATGATGCTCAAAGTTCATGCACAGTAAACTTAGAAGGAGCACAAGCTGAGGAACAGAGGCTAGATCTTGATGGGGAAGAGGAAGGCTCCAACATGAACGCTTCAATTCCAACTGATCACTTATCCTAA 2547 43.62 MGKFLIRKCLISLLLLIISEYLQTGDAESNSLFINCGSSSNETADGRKWIGDLTSEGNFSVGNLGATINASIATLNGDSVFEPLYKTARIFTNSLNYTFKGFRGNHVVRLHFCPFPFENLNVNESSFSVSANGLRLVSEFSVPDEIAYKNMEFQRSGVNSSSFSLIKEFIISVNSEVLVLEFSPSGGSFGFVNAIEIVPLVDELFGGSIDKVGGSAVSLNVSERGTETMYRLNVGGPVIKPTQDSDLWRMWEVDSSYMITANAGSEIHNSSNVTYASTNDSIVAPLPVYETARTMSETEVLEKRFNMSWKFEIHPGFEYLIRLHFCELLYEKARERVFKIYINNRTAVESFDVFVRAGGMNRAYHVDFLEPISSKINTLWIQLGPDTAAGAAGTDALLNGLEIFKLSQNGNLAYIDRFNALEESTGNSKSQILWIGIGAGLASVVFLAVITILIIYFCRIRRRNFTKKNSSRWRAGSSHGATVTNTYARGSSGGGQSVFGTLPSVRVGKWFTLAEILAATDNFDEALMIGVGGFGKVYRGEIDDGTLVAIKRANPQSQQGLAEFETEIEMLSKLRHRHLVSMIGFCDEQKEMILVYEYMANGTLRSHLFGSNLPPLTWKQRLEVCIGAARGLHYLHTGAERGIIHRDVKTTNILLDENFVAKMSDFGLSKTGPALDHTHVSTAVKGSFGYLDPEYFRRQQLSEKSDVYSFGVVLLEVVCARAVINPSLPKDQINLAEWAMKWQRKKLLHSIIDPHLKDKYCPESLKTFGEIAEKCLADEGKIRPTMGEVLWHLEYALQLHDAWIRTNDAQSSCTVNLEGAQAEEQRLDLDGEEEGSNMNASIPTDHLS 848
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 38303940 38306486 + ClCG01G025210.1 Cla01g02462 266051
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g02462 848 ProSitePatterns Serine/Threonine protein kinases active-site signature. 643 655 IPR008271 GO:0004672|GO:0006468
Cla01g02462 848 Gene3D - 224 408 - -
Cla01g02462 848 Gene3D - 27 200 - -
Cla01g02462 848 SMART serkin_6 523 796 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g02462 848 MobiDBLite consensus disorder prediction 827 848 - -
Cla01g02462 848 ProSiteProfiles Protein kinase domain profile. 523 795 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g02462 848 CDD STKc_IRAK 529 794 - -
Cla01g02462 848 Pfam Malectin-like domain 34 405 IPR024788 -
Cla01g02462 848 Pfam Protein tyrosine and serine/threonine kinase 528 790 IPR001245 GO:0004672|GO:0006468
Cla01g02462 848 PANTHER OS07G0166700 PROTEIN 21 822 IPR045272 GO:0004714|GO:0006468
Cla01g02462 848 Gene3D Phosphorylase Kinase; domain 1 501 598 - -
Cla01g02462 848 ProSitePatterns Protein kinases ATP-binding region signature. 529 551 IPR017441 GO:0005524
Cla01g02462 848 SUPERFAMILY Protein kinase-like (PK-like) 502 795 IPR011009 -
Cla01g02462 848 PANTHER OSJNBA0058K23.13 PROTEIN 21 822 - -
Cla01g02462 848 Gene3D Transferase(Phosphotransferase) domain 1 599 817 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00772 Cla-Chr1:9015042 Cla01g02462 Cla-Chr1:38303940 1.65E-61 dispersed
Cla01g02462 Cla-Chr1:38303940 Cla06g01573 Cla-Chr6:29289936 0 dispersed
Cla05g01077 Cla-Chr5:11141462 Cla01g02462 Cla-Chr1:38303940 1.08E-76 dispersed
Cla07g01515 Cla-Chr7:32347396 Cla01g02462 Cla-Chr1:38303940 8.22E-174 dispersed
Cla01g02462 Cla-Chr1:38303940 Cla11g01796 Cla-Chr11:31629607 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80311 PF12819 Malectin_like 8.80E-32 CL0202 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g02462 - - bhj:120073088 1605.11