Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g02476 ATGTTGTTGTTGTTTGAGATGGAGAATTATGAAGAAGGTGATTTGACTGATATTGTGAGAGGAGGAAGCTCAAGATCAAGATCAACAACAAGAAGCTCCACTTCTCATTGCAAAACGGAATTGGGTGATCAAGATGAAGATCAAGATTCTCCCTTTTATTCTTCATCACAAGATAACAATTACAATCCTCAGTGGAGTAGCTCCCAATTTTCATCACAACTACTACTACTACAAGATCATCATCATCATCATCATCATCAATACAGTTTTGGGGATCCATTTTGTAGTACTGTTGCTGCTTCACTTGATCTTCATCAAGAGCTGGATAATACTAATAATAATACTTTTTTCAATGGAATTACTACTACTACTACTACTTCTACTCAAGATGAGCTTATCAAAACGCCTTCTTCTTCCAATATTTTCTCACGTATGCTTCAGATCTCTCCTTCACCCGACAAATTCCCAACCATTTCTTCACTTAATTCCTCTTCTAATTTCCTAATTCCCAATCATTCTCTTAACTCTCCCACCACTCCACATTCTGATCACCTTCATCATTTTCTTCATCATAATGATAATAATCCCTCCCCCTCCGCCCTTCACATCTCTTCTCCTCGCAATCCACCCGGTATCAAGCGAAGGAAGAGCCAAGCAAGGAAAGTGGTTTGTGTTCCAGCTCCAGTGGCTGCTAGTAGTAGACCAAATGGGGAAGTTATTCCTTCTGATCTGTGGGCTTGGAGGAAATATGGTCAGAAACCCATTAAAGGCTCTCCATATCCTAGGGGGTACTATAGATGCAGCAGCTCAAAGGGATGCTCAGCAAGAAAACAAGTGGAGAGAAGTAGAACAGATCCAAACATGCTGGTGATTACTTACACATCTGAGCATAACCATCCATGGCCAACTCAAAGAAATGCTCTTGCTGGTTCTTCAAGGTCCCAACAATCTAAAAACAACAACATTACTACTACTACTTCTTCAACTTCAACAACAACACCAACACCCAATTCTTCAAAACTCTCTCAAGATCATCATCACAAAAATAAGGAAGAAAAAGAAGAGCATCAAGATCAAAACAATGGAACATTATTATCAGCTGCAGCAACAACAACATCAAATAACAATAATAATGTTAAGGAAGAGGAAACTGAGAACCATCATCATCAATCGATGATGAGTGAAGGGTTTGATGATGATCATGATTTCTTTGCAGATTTGGAAGAATTAGAAACAGACCCTTTAACTCTGTTGTTCACTACACAACAACCCCTTAAATTAGACCAAATCAAAGAATCAGCCACCACCACCCCCACTACTACTACAGGTTGCTTACACGACGTCGTTCCATTCAATAATCTATTTGATTGGCCACCACCTCCTCTAAACAACAATTCAACTCCATTTCATGAACAACCACCACCTACTACTCCTACCAACGGAGGTTTTTATTAA 1455 39.31 MLLLFEMENYEEGDLTDIVRGGSSRSRSTTRSSTSHCKTELGDQDEDQDSPFYSSSQDNNYNPQWSSSQFSSQLLLLQDHHHHHHHQYSFGDPFCSTVAASLDLHQELDNTNNNTFFNGITTTTTTSTQDELIKTPSSSNIFSRMLQISPSPDKFPTISSLNSSSNFLIPNHSLNSPTTPHSDHLHHFLHHNDNNPSPSALHISSPRNPPGIKRRKSQARKVVCVPAPVAASSRPNGEVIPSDLWAWRKYGQKPIKGSPYPRGYYRCSSSKGCSARKQVERSRTDPNMLVITYTSEHNHPWPTQRNALAGSSRSQQSKNNNITTTTSSTSTTTPTPNSSKLSQDHHHKNKEEKEEHQDQNNGTLLSAAATTTSNNNNNVKEEETENHHHQSMMSEGFDDDHDFFADLEELETDPLTLLFTTQQPLKLDQIKESATTTPTTTTGCLHDVVPFNNLFDWPPPPLNNNSTPFHEQPPPTTPTNGGFY 484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 38417034 38420110 - ClCG01G025360.2 Cla01g02476 266065
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g02476 484 SMART WRKY_cls 241 301 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla01g02476 484 MobiDBLite consensus disorder prediction 16 59 - -
Cla01g02476 484 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 12 436 IPR044810 GO:0003700
Cla01g02476 484 Pfam WRKY DNA -binding domain 243 300 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla01g02476 484 MobiDBLite consensus disorder prediction 464 484 - -
Cla01g02476 484 MobiDBLite consensus disorder prediction 285 340 - -
Cla01g02476 484 Gene3D WRKY domain 215 295 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cla01g02476 484 MobiDBLite consensus disorder prediction 341 359 - -
Cla01g02476 484 PANTHER WRKY TRANSCRIPTION FACTOR 14-RELATED 12 436 - -
Cla01g02476 484 ProSiteProfiles WRKY domain profile. 236 302 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla01g02476 484 MobiDBLite consensus disorder prediction 360 379 - -
Cla01g02476 484 MobiDBLite consensus disorder prediction 380 396 - -
Cla01g02476 484 SUPERFAMILY WRKY DNA-binding domain 240 302 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cla01g02476 484 MobiDBLite consensus disorder prediction 178 219 - -
Cla01g02476 484 MobiDBLite consensus disorder prediction 21 37 - -
Cla01g02476 484 MobiDBLite consensus disorder prediction 258 396 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla01g02476 Cla03g00810 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00089 Cla-Chr1:759937 Cla01g02476 Cla-Chr1:38417034 1.92E-35 dispersed
Cla01g00904 Cla-Chr1:11676186 Cla01g02476 Cla-Chr1:38417034 1.63E-41 dispersed
Cla01g02476 Cla-Chr1:38417034 Cla03g00810 Cla-Chr3:10213606 2.46E-67 dispersed
Cla01g02476 Cla-Chr1:38417034 Cla05g00141 Cla-Chr5:1297484 4.80E-44 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60542 PF03106 WRKY 2.80E-25 CL0274 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g02476 - - cmo:103484291 468.774