Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla01g02476 | ATGTTGTTGTTGTTTGAGATGGAGAATTATGAAGAAGGTGATTTGACTGATATTGTGAGAGGAGGAAGCTCAAGATCAAGATCAACAACAAGAAGCTCCACTTCTCATTGCAAAACGGAATTGGGTGATCAAGATGAAGATCAAGATTCTCCCTTTTATTCTTCATCACAAGATAACAATTACAATCCTCAGTGGAGTAGCTCCCAATTTTCATCACAACTACTACTACTACAAGATCATCATCATCATCATCATCATCAATACAGTTTTGGGGATCCATTTTGTAGTACTGTTGCTGCTTCACTTGATCTTCATCAAGAGCTGGATAATACTAATAATAATACTTTTTTCAATGGAATTACTACTACTACTACTACTTCTACTCAAGATGAGCTTATCAAAACGCCTTCTTCTTCCAATATTTTCTCACGTATGCTTCAGATCTCTCCTTCACCCGACAAATTCCCAACCATTTCTTCACTTAATTCCTCTTCTAATTTCCTAATTCCCAATCATTCTCTTAACTCTCCCACCACTCCACATTCTGATCACCTTCATCATTTTCTTCATCATAATGATAATAATCCCTCCCCCTCCGCCCTTCACATCTCTTCTCCTCGCAATCCACCCGGTATCAAGCGAAGGAAGAGCCAAGCAAGGAAAGTGGTTTGTGTTCCAGCTCCAGTGGCTGCTAGTAGTAGACCAAATGGGGAAGTTATTCCTTCTGATCTGTGGGCTTGGAGGAAATATGGTCAGAAACCCATTAAAGGCTCTCCATATCCTAGGGGGTACTATAGATGCAGCAGCTCAAAGGGATGCTCAGCAAGAAAACAAGTGGAGAGAAGTAGAACAGATCCAAACATGCTGGTGATTACTTACACATCTGAGCATAACCATCCATGGCCAACTCAAAGAAATGCTCTTGCTGGTTCTTCAAGGTCCCAACAATCTAAAAACAACAACATTACTACTACTACTTCTTCAACTTCAACAACAACACCAACACCCAATTCTTCAAAACTCTCTCAAGATCATCATCACAAAAATAAGGAAGAAAAAGAAGAGCATCAAGATCAAAACAATGGAACATTATTATCAGCTGCAGCAACAACAACATCAAATAACAATAATAATGTTAAGGAAGAGGAAACTGAGAACCATCATCATCAATCGATGATGAGTGAAGGGTTTGATGATGATCATGATTTCTTTGCAGATTTGGAAGAATTAGAAACAGACCCTTTAACTCTGTTGTTCACTACACAACAACCCCTTAAATTAGACCAAATCAAAGAATCAGCCACCACCACCCCCACTACTACTACAGGTTGCTTACACGACGTCGTTCCATTCAATAATCTATTTGATTGGCCACCACCTCCTCTAAACAACAATTCAACTCCATTTCATGAACAACCACCACCTACTACTCCTACCAACGGAGGTTTTTATTAA | 1455 | 39.31 | MLLLFEMENYEEGDLTDIVRGGSSRSRSTTRSSTSHCKTELGDQDEDQDSPFYSSSQDNNYNPQWSSSQFSSQLLLLQDHHHHHHHQYSFGDPFCSTVAASLDLHQELDNTNNNTFFNGITTTTTTSTQDELIKTPSSSNIFSRMLQISPSPDKFPTISSLNSSSNFLIPNHSLNSPTTPHSDHLHHFLHHNDNNPSPSALHISSPRNPPGIKRRKSQARKVVCVPAPVAASSRPNGEVIPSDLWAWRKYGQKPIKGSPYPRGYYRCSSSKGCSARKQVERSRTDPNMLVITYTSEHNHPWPTQRNALAGSSRSQQSKNNNITTTTSSTSTTTPTPNSSKLSQDHHHKNKEEKEEHQDQNNGTLLSAAATTTSNNNNNVKEEETENHHHQSMMSEGFDDDHDFFADLEELETDPLTLLFTTQQPLKLDQIKESATTTPTTTTGCLHDVVPFNNLFDWPPPPLNNNSTPFHEQPPPTTPTNGGFY | 484 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 38417034 | 38420110 | - | ClCG01G025360.2 | Cla01g02476 | 266065 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla01g02476 | 484 | SMART | WRKY_cls | 241 | 301 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cla01g02476 | 484 | MobiDBLite | consensus disorder prediction | 16 | 59 | - | - | |
Cla01g02476 | 484 | PANTHER | WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED | 12 | 436 | IPR044810 | GO:0003700 | |
Cla01g02476 | 484 | Pfam | WRKY DNA -binding domain | 243 | 300 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cla01g02476 | 484 | MobiDBLite | consensus disorder prediction | 464 | 484 | - | - | |
Cla01g02476 | 484 | MobiDBLite | consensus disorder prediction | 285 | 340 | - | - | |
Cla01g02476 | 484 | Gene3D | WRKY domain | 215 | 295 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cla01g02476 | 484 | MobiDBLite | consensus disorder prediction | 341 | 359 | - | - | |
Cla01g02476 | 484 | PANTHER | WRKY TRANSCRIPTION FACTOR 14-RELATED | 12 | 436 | - | - | |
Cla01g02476 | 484 | ProSiteProfiles | WRKY domain profile. | 236 | 302 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cla01g02476 | 484 | MobiDBLite | consensus disorder prediction | 360 | 379 | - | - | |
Cla01g02476 | 484 | MobiDBLite | consensus disorder prediction | 380 | 396 | - | - | |
Cla01g02476 | 484 | SUPERFAMILY | WRKY DNA-binding domain | 240 | 302 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cla01g02476 | 484 | MobiDBLite | consensus disorder prediction | 178 | 219 | - | - | |
Cla01g02476 | 484 | MobiDBLite | consensus disorder prediction | 21 | 37 | - | - | |
Cla01g02476 | 484 | MobiDBLite | consensus disorder prediction | 258 | 396 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cla01g02476 | Cla03g00810 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla01g00089 | Cla-Chr1:759937 | Cla01g02476 | Cla-Chr1:38417034 | 1.92E-35 | dispersed | |
Cla01g00904 | Cla-Chr1:11676186 | Cla01g02476 | Cla-Chr1:38417034 | 1.63E-41 | dispersed | |
Cla01g02476 | Cla-Chr1:38417034 | Cla03g00810 | Cla-Chr3:10213606 | 2.46E-67 | dispersed | |
Cla01g02476 | Cla-Chr1:38417034 | Cla05g00141 | Cla-Chr5:1297484 | 4.80E-44 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
60542 | PF03106 | WRKY | 2.80E-25 | CL0274 | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla01g02476 | - | - | cmo:103484291 | 468.774 |