Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g02493 ATGGGGAAGAAGAAGAAGAGAGTTTCGTCTAAGGTATGGTGCTACTATTGCGACAGAGAATTCGATGACGAGAAGATATTGGTGCAGCATCAGAAGGCTAAACACTTCAAGTGCCATGTCTGTCACAAGAAGCTTTCTACTGCCGGCGGTATGGTCATCCACGTTCTTCAGGTCCACAAAGAGTCAGTCACCAAAGTTCCTAATGCAAAACCAGGCAGAGAAGCAACAGATATCGAAATATACGGAATGCAAGGAATTCCTCCGGATGTCTTGGCAGCACACTATGGAGAGGAGGAGGAAGAGTCCTTGTCGAAGGTGGCCAAAGTGGAGATGCCATCAACTCAGATGGTTGGAGGTGTGGTGCCCGGATCACTGGGTATTGTATACCCTCCTCAGCCAGGTTTAGCTGCAATGCAACCTATTTATCCTTCAACTGGACAAGCACAGCCTACTGCCTGGCCAGTTCCACCTCGTCCCCAACCTTGGTTCCCCCCAAATTCAGCCGTTTCAATTCCTCCTCCTGCCCCATTGGGCTATGCTCAGCAGCCACTATTTCCTGTGCAGACTGCAAGGCCTCCACTTCCAGTATCATCAACTCCTATGCTCCAGCCTTTACAGATAACGCCTCCTGGATTGACGTCAACTACACCTTCAGTTTCTGTATCTCAACCGTTGTTCCCTGTTGTTAGTAATAGCCACGGACCTACCCAAAGCTCTCCTTTTTCTTCATCTACACTTTCAACAAGCATTCCTTTGACCTCGGCAGCAGATATCAAGGGCTCAGTGACACATCTGGGCACCAACTCCTTTTCTACAATTGGAAATCAAGTTTCAAACGTTCCAGGTGACGTAACTGCCTTTAATGCTGTAGGTGCAATATTAAGCAATTCACATTCCTATGCCTCGGGACCAAATACAGGTGGTCCTTCTATCGGACCACCTCCTGTAATTGCGAATAAGGCTCCTACTCAACCATCAACGAATGAAGTATATTTGGTTTGGGATGATGAGGCGATGTCTATGGAGGAAAGAAGAATGTCCTTAACTAAGTATCAGGTGCATGATGAAACTAGCCAGAACCTTGAGCCTGAACTCACATTTTACCTCGAACTTCATCATCAAATTTTGCACGCCATACCACCAATCTTGTGGGCATCAAAAGGCTCAAGTAGTGAATACGACTTTGACCAGATGAGTTCAATTGATGCAGCCATAGACAAACGAATCTTGGAAAGCAGGCTTGCTGGCCGAATGCCATTTTAG 1263 46.79 MGKKKKRVSSKVWCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMVIHVLQVHKESVTKVPNAKPGREATDIEIYGMQGIPPDVLAAHYGEEEEESLSKVAKVEMPSTQMVGGVVPGSLGIVYPPQPGLAAMQPIYPSTGQAQPTAWPVPPRPQPWFPPNSAVSIPPPAPLGYAQQPLFPVQTARPPLPVSSTPMLQPLQITPPGLTSTTPSVSVSQPLFPVVSNSHGPTQSSPFSSSTLSTSIPLTSAADIKGSVTHLGTNSFSTIGNQVSNVPGDVTAFNAVGAILSNSHSYASGPNTGGPSIGPPPVIANKAPTQPSTNEVYLVWDDEAMSMEERRMSLTKYQVHDETSQNLEPELTFYLELHHQILHAIPPILWASKGSSSEYDFDQMSSIDAAIDKRILESRLAGRMPF 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 38605417 38611866 - ClCG01G025530.1 Cla01g02493 266082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g02493 420 Gene3D Classic Zinc Finger 1 66 - -
Cla01g02493 420 ProSitePatterns Zinc finger C2H2 type domain signature. 14 35 IPR013087 -
Cla01g02493 420 ProSiteProfiles Zinc finger BED-type profile. 7 66 IPR003656 GO:0003677
Cla01g02493 420 ProSitePatterns Zinc finger C2H2 type domain signature. 38 59 IPR013087 -
Cla01g02493 420 PANTHER BUB3-INTERACTING AND GLEBS MOTIF-CONTAINING PROTEIN ZNF207 1 420 - -
Cla01g02493 420 SMART c2h2final6 12 35 IPR013087 -
Cla01g02493 420 SMART c2h2final6 36 59 IPR013087 -
Cla01g02493 420 PANTHER ZINC FINGER PROTEIN 207 1 420 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60544 None None None None Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g02493 - - csv:101206973 665.225