Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g02533 ATGGAGAGCCACGGAGCCGGTAGTTATTTCGTGGACGAGAAGGCCGTCCTCGTCGAGAACATTTTCTTCGACTTCCTTAAGAGCTTTCGCCTCAATGGGAACTCTGGAGACCCTTACTACGAGGCAGAGATAGAAGCTATGATGGCTGGCGAATCTAACACCATGTTTATTGATTTCGCTCACCTCATGGGTTCCAATAATCTTCTTCACATTGCAATCGCCGACGAATATCTGAGGTTTGAACCTTACCTGAAGAACGCTTGTAAGCGGTTCGTAATGGAGCAGAATCCTTCTTTCATCGCTGACGATAACCCATTCAAGGACATAAATGTTGCTTTCTTCAACATTCCTGTTTCTAAAAGGTTGAGAGAATTGACTACTGCAGAAATTGGGAAATTAGTATCTGTGACAGGAGTTGTGACGCGAACAAGCGAGGTCCGACCAGAGCTTCTACAGGGGACCTTCAAGTGCTTAGAATGTGGAAATGTCATAAAGAATGTTGAACAACAATTTAAGTACACCGAGCCAACAATATGCATGAACCCGACCTGTTCAAATAGAACAAAGTGGGCATTACTTCGGCAAGAGAGTAAATTCGCTGATTGGCAGAGGGTGCGAATGCAAGAGACTTCAAAGGAGATACCAGCTGGCTCTCTTCCACGATCTCTGGATGTTATTCTCCGCCATGAAATGGTTGAACGAGCTAGGGCTGGAGACACGGTCATCTTCACAGGTACAGTAGTTGTCATACCAGATATATTAGCATTAGCCTCTCCAGGAGAAAGAGCAGAATGTCGTCGAGAAGCTTCAGAGCGAAGGAATGCTGCGGTTGGGCATGAAGGAATGAGGGGGCTACGAGCCCTAGGAGTTTTAGATGGCAGAAGGAATTTTGATATCAGAAATAGGAAAAAGGATGCGGATGAAGACAACCAACAATTTACTACTGCAGAGCTTGATGACATTCAAAGAATGAGGAATACACCTGACTTTTTCAATAGACTTGTTGATAGCATTGCACCGGCAGTTTTTGGCCATCAAGATATCAAGCGAGCAATCCTGTTGATGCTGTTAGGTGGTGTCCACAAGTTGACTCATGAAGGCATTAACCTTCGAGGTGACATCAACGTTTGTATAGTAGGAGATCCAAGCTGTGCGAAATCTCAGTTTCTTAAGTATACTTCAGGTATTGTGCCAAGATCAGTTTACACATCTGGAAAGTCCTCTTCTGCTGCTGGATTGACTGCAACTGTAGCCAAAGAACCAGAAACTGGAGAGTTTTGTATTGAGATGGTGGTACCTATAGTAGGCTGGGGACAAACAGGAGAGGGAATTCTTCCTATTGTCAAGTTTACAATTCATCACATCCCTTCTCATAGTTTAGAAAAAGCTGGTGCCTTGATGCTTGCCGACAATGGCATTTGCTGCATTGATGAATTTGACAAAATGGACATCAGGGATCAGGTTGCAATTCATGAAGCTATGGAGCAGCAGACCATAAGCATTACAAAAGCCGGAATACAGGCAACACTAAATGCTAGGACGTCAATCCTCGCTGCTGCTAATCCTACAGGAGGACGCTATGACAAATCTAAACCACTCAAGTATAATGTTGCTCTGCCTCCTGCTATTCTCTCAAGGTTTGACCTTGTGTACGTGATGATAGATGACCCAGATGATCAAACAGATTACCATATTGCACATCACATTGTGAGAGTACATCAGAAGCATGAAGATGCTCTCTCTCCTGCATTTACTACTGCAGAGTTGAAGCGTTACATTGCATATGCAAAAACTCTAAAACCAAAGTTAAGTTTAGAAGCCAGAAAGGTATTGGTGGACTCTTATGTCACTCTTCGCAGAGGAGATACAGCTCCTGGAAGTAGGGTTGCCTATCGCATGACAGTTAGGCAGCTCGAGGCATTAATAAGGTTGTCTGAAGCAATTGCTCGTAGTTATTTGGAGACTCTGGTATCAATTTTGGAACTTTTCTTGAGAACTGCATTTACAGGTTCAATCGCGTCATGTGCGTTTAGCAGTGACTTTACTGAAAACGTCAATAATCAGGCAAGTAGCCATGTGGAATCTAGTGAGATTGACCTATCTGAATTTGAAGAAGAAACTAACGGAGGTGGAGATGGTGATAATAATGTCGGCGATGGGCCTAATGAGGTTGATGCTGAACCTAGGAAAGGTGCAACAGAGCCAACTACTGGAAATATTGGTTCTGCAAGTAAACATAGGAAGGAGAAACTTCTTGTGAGTGATGAATATTTCCAGAGGGTTACTCAAGCCCTTGTCATGCGCCTCAGACAGCACGAAGAACATGCGATGCAAGAAGGACTTGGGCTAGCGGGAATGAGGCAGAGAGACTTAATTGAGTGGTATGTGGATCAACAGAACGAAAGAAATAGCTATAGCTCCATGGAGGAGGCAGATAAAGAAATCAAATTAGTTAGAGCTATTATCCAGCATTTGATAGTAAACGAAGGCCATTTGATAGTGGTAGATGACGGGAGGCCAGTGGATGGCGAGGTTGAAGGCGAACCACCATTAGTAAGAATTAGAAATAACAGGATTTTAGCTGTGGCTCCTAATTATATCGTTGATTGA 2610 43.6 MESHGAGSYFVDEKAVLVENIFFDFLKSFRLNGNSGDPYYEAEIEAMMAGESNTMFIDFAHLMGSNNLLHIAIADEYLRFEPYLKNACKRFVMEQNPSFIADDNPFKDINVAFFNIPVSKRLRELTTAEIGKLVSVTGVVTRTSEVRPELLQGTFKCLECGNVIKNVEQQFKYTEPTICMNPTCSNRTKWALLRQESKFADWQRVRMQETSKEIPAGSLPRSLDVILRHEMVERARAGDTVIFTGTVVVIPDILALASPGERAECRREASERRNAAVGHEGMRGLRALGVLDGRRNFDIRNRKKDADEDNQQFTTAELDDIQRMRNTPDFFNRLVDSIAPAVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYTSGIVPRSVYTSGKSSSAAGLTATVAKEPETGEFCIEMVVPIVGWGQTGEGILPIVKFTIHHIPSHSLEKAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPTGGRYDKSKPLKYNVALPPAILSRFDLVYVMIDDPDDQTDYHIAHHIVRVHQKHEDALSPAFTTAELKRYIAYAKTLKPKLSLEARKVLVDSYVTLRRGDTAPGSRVAYRMTVRQLEALIRLSEAIARSYLETLVSILELFLRTAFTGSIASCAFSSDFTENVNNQASSHVESSEIDLSEFEEETNGGGDGDNNVGDGPNEVDAEPRKGATEPTTGNIGSASKHRKEKLLVSDEYFQRVTQALVMRLRQHEEHAMQEGLGLAGMRQRDLIEWYVDQQNERNSYSSMEEADKEIKLVRAIIQHLIVNEGHLIVVDDGRPVDGEVEGEPPLVRIRNNRILAVAPNYIVD 869
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 38971495 38979069 + ClCG01G025960.1 Cla01g02533 266122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g02533 869 Gene3D - 10 118 - -
Cla01g02533 869 ProSiteProfiles MCM family domain profile. 330 569 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cla01g02533 869 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 12 429 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cla01g02533 869 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 462 819 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cla01g02533 869 PRINTS Mini-chromosome maintenance (MCM) protein family signature 371 386 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cla01g02533 869 PRINTS Mini-chromosome maintenance (MCM) protein family signature 492 505 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cla01g02533 869 PRINTS Mini-chromosome maintenance (MCM) protein family signature 516 528 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cla01g02533 869 PRINTS Mini-chromosome maintenance (MCM) protein family signature 464 478 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cla01g02533 869 PRINTS Mini-chromosome maintenance (MCM) protein family signature 543 551 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cla01g02533 869 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 119 131 IPR008049 GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Cla01g02533 869 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 169 186 IPR008049 GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Cla01g02533 869 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 77 89 IPR008049 GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Cla01g02533 869 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 281 302 IPR008049 GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Cla01g02533 869 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 222 233 IPR008049 GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Cla01g02533 869 Pfam MCM6 C-terminal winged-helix domain 750 867 IPR041024 -
Cla01g02533 869 Pfam MCM P-loop domain 318 429 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cla01g02533 869 Pfam MCM P-loop domain 461 573 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cla01g02533 869 Pfam MCM N-terminal domain 21 115 IPR027925 -
Cla01g02533 869 PANTHER DNA REPLICATION LICENSING FACTOR MCM6 12 429 - -
Cla01g02533 869 Gene3D - 746 869 - -
Cla01g02533 869 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 340 651 IPR027417 -
Cla01g02533 869 Pfam MCM OB domain 122 250 IPR033762 -
Cla01g02533 869 SUPERFAMILY Nucleic acid-binding proteins 22 252 IPR012340 -
Cla01g02533 869 Gene3D - 308 662 IPR027417 -
Cla01g02533 869 SMART mcm 118 669 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cla01g02533 869 Gene3D - 122 250 IPR012340 -
Cla01g02533 869 MobiDBLite consensus disorder prediction 688 747 - -
Cla01g02533 869 CDD MCM6 333 657 - -
Cla01g02533 869 PANTHER DNA REPLICATION LICENSING FACTOR MCM6 462 819 - -
Cla01g02533 869 ProSitePatterns MCM family signature. 472 480 IPR018525 GO:0003677|GO:0005524|GO:0006260
Cla01g02533 869 Pfam MCM AAA-lid domain 588 657 IPR041562 -
Cla01g02533 869 Coils Coil 686 706 - -
Cla01g02533 869 Gene3D - 149 200 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02533 Cla-Chr1:38971495 Cla02g00495 Cla-Chr2:4896804 2.91E-113 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g02533 K02542 - csv:101219775 1438.71