Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g02534 ATGGTTGCAGCAGCTTCAGCTTGGCACATGAAGTTCTTCACACTTACACTTGTGCTGCTCCTCCTTCCTTGTGTATGTGTATGTGTGCACTCCCACTCACTGTCCCTCAAGGCACAAGCTTCTGTTCTGCTTTCCATCAAACACAGTTTCGATGAAGCCACTCCAATTTCGACTCTCCTGGACTGGAATGCTTCAAATTACTCAGACCTCTGCAGTTGGACTGGAATTCAATGCGATGCCATTGGCATGAAGAGATCAGTAGTGTCGCTCGACATTTCCAATTCCAACATATCCGGGACCTTCCCCCCTCTAATTCACAAGCTAACCAAGCTTCGCTTTCTCAACATTTCCAACAATCAGTTCAGGGGGCAACTCCAGTGGGAGTATTCTCAGTTGAAACTGCTGCAGGTATTTGATGCTTATAACAACAATTTCAATGGTTCCCTCCCCACAGGCGTCCTTCAACTTCCCAGTCTAAAGCACTTAAATCTTGGCGGGAATTACTTCACCGGTCGAATCCCTCCAAGCTATGGTGATATGGGGGAGCTCATTTATCTGTCCCTTGCCGGCAATGACTTGGGCGGTCCCATTCCCCCTGAGCTCGGTAATCTTACCAATCTCCACCGCCTTTATTTGGGATACTTCAACCAGTTTGAGGGTGGGATACCGTCTCAACTCGAACAACTAGTGAATTTGAATCATCTCGACCTTGCGAGTTGTGGTTTACAAGGTCCAATCCCACCCGGGTTGGGGAATCTCAACAAGTTGGACACTCTGTTCTTGCAGACAAATCAGCTGAGCGGTTCAATTCCAACCCAGTTGGGCAACTTGAGCGCCTTGATTTCCCTTGACCTCTCCAACAACCAGTTAACGGGAGAGATCCCCCTTGAATTTGCAAACCTCCGCCAGCTTTCGCTGCTCAATTTATTCATGAACAAGTTGCATGGGGAGATTCCTAATGTTGTAGCCCATCTTCCGGGGTTGGAGGTTTTGAAGCTGTGGCAAAACAACTTCACAGGAGGCATTCCGTCAAAGCTGGGTGAGAATGGGAGGCTGAGGGAGGTGGACTTGTCCAGCAACAAGCTCACTGGGATGGTCCCGGAGCGTTTGTGCTTAGGAGGAAGGCTGAAGATCTTGATTTTACTCAACAATTTTTTGTTTGGGGGTGTGCCAGGTGATCTAGGGCGATGCCAGACGCTTGTAAGAGTTCGGATGGGTCAGAATTATTTGACGGGAACAATCCCAGATGGGCTGCTTTACTTGCCACAACTCTCCCTCATGGAATTGCAGAACAACTACCTGAGCGGACCCCTTCCACAACCACAACACATCCGCCAACTCCCCTCCAAACTAGGCCGCCTAAACCTTTCCAACAATCGCTTTTCTGGATCCCTCCCCATCTCCATCAGCAACTTTACAAACCTCCAGATTCTGCTTTTGAGTGGAAACCGTTTCTCTGGCCACATTCCTCCCCAAATTGGCAAACTGCGAAATCTTCTCAAGCTAGACATGAGCAGAAACAACTTTTCCGGTTCAATCCCTCCTGAGTTCAGCAATTGTGTCTCCCTCACTTACCTGGATTTGAGCCTCAATCACCTAACTTCTTCAATCCCAGTTCAAATCTCACAAATTCGCATCTTAAATTATCTTAACTTGTCTTGGAACCATCTCACCCACACCCTTCCCATCGAAATTGGCTCCATAAAAAGCTTGACCTCTGCCGACTTCTCCCACAACAACTTTTCCGGTCCCATACCCCAAACTGGCCAGTTTCTACTCTTCAATTCCACATCCTTTGTGGGCAACCCTCAATTGTGTGGATTCTCCTTGAATCCCTGCAAGTCTCAAACCCCAACCACCGCCAATTCGAACAAAGGTGTTGGGAAATATAAGCTGGTGTTCGCGTTGGGGCTATTGATGTGTTCAGTAATATTTGCAGCTCTGGCAATTGTTCAGACAAGGAAAGCGAAAAAGAAATCAAGTTCGTGGAAGCTAGCAGCATTCCAGAAGCTGGAATTTGGAAGTAAGGATATCACAGAGTGCATAAAAGAGAACAACATAATTGGAAAAGGAGGAGCTGGTATTGTGTACAAAGGAATCATGCCAAACGGGGAACAAGTAGCCATAAAAAAGCTGTTGGCCATAACCAAGGGCTCCTCCCACGACAACGGCCTGTCCGCCGAGATACGAACGCTGGGCAAAATCCGGCATAGGAACATCGTGAGATTGCTTGCATTTTGCTCCAATAAGCAGACGAATCTGCTGGTATACGAGTACATGCCCAATGGAAGTTTAGGAGAAGTTCTCCACGGGAAGAGGGGGGGTTCTCTAAAATGGGGAACCAGGCTGAAGATAGCCATAGAAGCCGCCAAAGGGCTTTGCTATTTGCACCATGACTGCTCCCCGCTCATAATTCATAGGGACGTCAAGTCCAACAACATTTTGCTCAACTCAGACTTCGAGGCTCATGTAGCGGACTTCGGTTTGGCCAAGTTCTTGCAAGACAATGGAACATCAGAGTGCATGTCTGCAATAGCCGGCTCTTATGGGTACATTGCTCCAGAATATGCATACACATTAAAAGTGGACGAAAAAACTGATGTTTACAGTTTTGGAGTGGTGCTGCTGGAGTTGATAACGGGGCGGAAGCCAGTTGGAAATTTTGGAGAAGATGGTTTGGACATTGTCCAGTGGGCTAGGATTCAAACCAACTCCACCAAAGAAGGTGTTGTTAAGCGTGGAGCGACCAACAATGAAAGAAGTGGTTCAAATGCTTGCACAAGCCCATCAACCAAATACTTTCCACATGCATTGACCATACCCTATTATCAACCCATAGCCAATGTTTGGATTGAAGTTTTAATTCCATTCTACATGAGGTGCCTACTGACTCGTGGTTCATCGTGGTCAGAGCCTTGTATCGCATATGCCACCCTACCACAGCCACAAGAATGTGGAGAGCAGATGGGATCAAAAATCACATATCAATACTGGCAAGATCTTAAAAGAATTCGAGATTGCATTGGAATTGTTCCCAACGTCCGCTTCATTTGGTTTCCCTTCCTCAATCAAAGCCTGTCCCAGGCCCCAAGAATTTGTGTAAAGTTACATACAACAGCACACTTTATGGCTAATGCTTATGAAACAAAACCAGTCATGCGGCCGCGTTGTCCAAATGCTCTCAAATATGACACTGTTTCTGTGTCATCCAGTTTAATCCGAAAGCAATCTGTTGAAGTATAA 3243 46.81 MVAAASAWHMKFFTLTLVLLLLPCVCVCVHSHSLSLKAQASVLLSIKHSFDEATPISTLLDWNASNYSDLCSWTGIQCDAIGMKRSVVSLDISNSNISGTFPPLIHKLTKLRFLNISNNQFRGQLQWEYSQLKLLQVFDAYNNNFNGSLPTGVLQLPSLKHLNLGGNYFTGRIPPSYGDMGELIYLSLAGNDLGGPIPPELGNLTNLHRLYLGYFNQFEGGIPSQLEQLVNLNHLDLASCGLQGPIPPGLGNLNKLDTLFLQTNQLSGSIPTQLGNLSALISLDLSNNQLTGEIPLEFANLRQLSLLNLFMNKLHGEIPNVVAHLPGLEVLKLWQNNFTGGIPSKLGENGRLREVDLSSNKLTGMVPERLCLGGRLKILILLNNFLFGGVPGDLGRCQTLVRVRMGQNYLTGTIPDGLLYLPQLSLMELQNNYLSGPLPQPQHIRQLPSKLGRLNLSNNRFSGSLPISISNFTNLQILLLSGNRFSGHIPPQIGKLRNLLKLDMSRNNFSGSIPPEFSNCVSLTYLDLSLNHLTSSIPVQISQIRILNYLNLSWNHLTHTLPIEIGSIKSLTSADFSHNNFSGPIPQTGQFLLFNSTSFVGNPQLCGFSLNPCKSQTPTTANSNKGVGKYKLVFALGLLMCSVIFAALAIVQTRKAKKKSSSWKLAAFQKLEFGSKDITECIKENNIIGKGGAGIVYKGIMPNGEQVAIKKLLAITKGSSHDNGLSAEIRTLGKIRHRNIVRLLAFCSNKQTNLLVYEYMPNGSLGEVLHGKRGGSLKWGTRLKIAIEAAKGLCYLHHDCSPLIIHRDVKSNNILLNSDFEAHVADFGLAKFLQDNGTSECMSAIAGSYGYIAPEYAYTLKVDEKTDVYSFGVVLLELITGRKPVGNFGEDGLDIVQWARIQTNSTKEGVVKRGATNNERSGSNACTSPSTKYFPHALTIPYYQPIANVWIEVLIPFYMRCLLTRGSSWSEPCIAYATLPQPQECGEQMGSKITYQYWQDLKRIRDCIGIVPNVRFIWFPFLNQSLSQAPRICVKLHTTAHFMANAYETKPVMRPRCPNALKYDTVSVSSSLIRKQSVEV 1080
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 38979112 38985153 - ClCG01G025970.2 Cla01g02534 266123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g02534 1080 SUPERFAMILY L domain-like 298 625 - -
Cla01g02534 1080 PANTHER UNNAMED PRODUCT 96 912 - -
Cla01g02534 1080 PANTHER UNNAMED PRODUCT 10 100 - -
Cla01g02534 1080 SUPERFAMILY Protein kinase-like (PK-like) 676 890 IPR011009 -
Cla01g02534 1080 Gene3D Phosphorylase Kinase; domain 1 646 759 - -
Cla01g02534 1080 Pfam Leucine Rich Repeat 158 176 IPR001611 GO:0005515
Cla01g02534 1080 Pfam Leucine Rich Repeat 280 301 IPR001611 GO:0005515
Cla01g02534 1080 SUPERFAMILY L domain-like 71 367 - -
Cla01g02534 1080 Pfam Leucine rich repeat N-terminal domain 37 79 IPR013210 -
Cla01g02534 1080 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE BAM3 10 100 - -
Cla01g02534 1080 Gene3D Transferase(Phosphotransferase) domain 1 760 932 - -
Cla01g02534 1080 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE BAM3 96 912 - -
Cla01g02534 1080 SMART LRR_typ_2 229 253 IPR003591 -
Cla01g02534 1080 SMART LRR_typ_2 472 495 IPR003591 -
Cla01g02534 1080 SMART LRR_typ_2 325 349 IPR003591 -
Cla01g02534 1080 SMART LRR_typ_2 496 519 IPR003591 -
Cla01g02534 1080 SMART LRR_typ_2 180 204 IPR003591 -
Cla01g02534 1080 SMART LRR_typ_2 520 544 IPR003591 -
Cla01g02534 1080 SMART LRR_typ_2 156 179 IPR003591 -
Cla01g02534 1080 SMART LRR_typ_2 277 300 IPR003591 -
Cla01g02534 1080 Pfam Leucine Rich repeat 520 535 IPR001611 GO:0005515
Cla01g02534 1080 ProSiteProfiles Protein kinase domain profile. 682 1066 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g02534 1080 Gene3D Ribonuclease Inhibitor 37 322 IPR032675 -
Cla01g02534 1080 Pfam Protein kinase domain 684 890 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g02534 1080 Gene3D Ribonuclease Inhibitor 323 621 IPR032675 -
Cla01g02534 1080 SMART serkin_6 682 1073 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g02534 1080 ProSitePatterns Serine/Threonine protein kinases active-site signature. 804 816 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02534 Cla-Chr1:38979112 Cla10g00664 Cla-Chr10:10116055 0 dispersed
Cla01g02534 Cla-Chr1:38979112 Cla01g01761 Cla-Chr1:32517304 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80313 PF00069 Pkinase 2.70E-44 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g02534 - - vvi:100258232 1301.19