Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00002 ATGGCGATGTTTTCCGTGAAAGCGCGGCTATTTCTAGCTTTCTTCTTTGTTATTGGAATTCATAACATCTTCTCCTACACAGATCCGAACGATGTTGAAATCCTGTTATCGTTGAAAGAGGTATGGAAAAATACGCCACCGACATGGAGGACATCAAGCGATCCATGTGGAGATCTTTGGGAAGGAGTCAGTTGCAACGATTCTAGAGTCACTGAATTAAAATTACCCTATATGGGCCTTGAAGGCCATCTTAGTGGTGACATTGGAGGCCTTACTGAACTAATAACATTGGACCTGTCATTTAATAGATATCTCACTGGTCCACTCTCTCCTAGGTTGGGGGATTTGCGAAATTTGAAGACCTTAATTCTAGCTGCATGTGGCTTCAGTGGTAATATTCCCCAAGAGTTGGGAAACCTTACTCAGTTGATGTCCTTGGCTTTGAATTCAAACCAACTCATTGGTTCTATACCACGTAGTCTTGGAAAGCTCTCCAAACTGGTTTTGCTAGACTTGATGGAGAATCAGTTGAATGGATCTCTCCCTGTCTCAACTTTTGATTCACCAGGTCTGGACCTTCTTCTCCAAGCAAAGCACTTTCACTTGAGCAAGAACAGGCTGTCAGGCTCTATACCCCCTAAGCTCTTTAGCGCTGATATGAAATTAATACACATAGTATTTGACCAGAATCAGTTTTCTGGGAGTATTCCACAAACCTTGGGACTTGTTAACACCCTTGAACTTCTCCGACTTGATAGGAATTCTCTAACAGGAATTGTCCCATCAGATCTTACCAACTTAAAACAAATCCTTCAGTTGAATTTAGCACACAATAATCTGACAGGGCCGTTGCCAAATTTAACTCAAATGACTTCACTATGTGTTGTGGACCTTAGTTACAACTCATTTGATGCATCAACAGCCCCAGATTGGTTCTCAAGCTTACCATCTCTCACCAGTTTGATCGTTGAATATGGGGAACTGGAAGGACCTGTCCCAGAAACAATCTTTAGCTTACCACAGATACAACAAATAATTTGGTACAGAAAACTGGGCCACAATTTATTTGGTGGGATATTGAGGATGGGTGGTAACATCAGTCAGCATCTGGAGCTTGTTAATTTGGAAGACAATCATATTACCCAATTTGAATTATTATCTGGATATAACAAAACTTTGATGCTTGAAGGAAATCCTGCGTGCAACAATAATGTTGATCCCCTCGTGAAACAAAATCATTATTGCCTACCTAATTCACAACCAGCTGATCTAAAGCCTAATTTTGGGAGTCCAGTACTCAACTGTGAAACTAGATTGTGCTCTAATGGCGAGAAGAATAACCCTCAAAACTGTGAATGTCAATATCCCTTTGTAGGGTCTTTCTACTTCAGAGGGCCCTCCATCAGAGACTTGTCTAATGACACCTTGTTTCAGTTACTGAAATACAGCCTCTCCAACAAACTAAATCTTTCTATTGCTTCAGTTGTTATTCAAAAGCCTGTGTTTGAAAGTGATGATTACCTTCACATTCAACTTCAACTTTTTCCACCCTTTGGAAAATATTTCAATCGTTCAGAAATTTTGAGGATTGCGTCTGCGTTGAGTTATCAAACTTTCCTTCTTTCCCCTGATTTAGGATCATTTTATTTCATTCCACTTGATCAGTACAATTTTTTAGGCAAGTCCCCTCCAGATGTTGGAAATTTTAGTAGCATTAGCAACAGGTGGCTTATTGGGATTGCAATTGGTTGTGGCTTACTGCTCCTAACCCTATTTGGAGTTGGAGTATATGCAATTAAGCAGAAGAAAAGAGTATCAAAAGCGATTTCATTGAGCAAGCCATTTGCTTCCTGGTCATCTATTGAACAAATAACTGGAGAAGCACCACAATTAAAGGGAGCCATATATTTTTCTTACGATGAGCTTAGGAAGTTGACAAATAATTTCTCCATAAGTAATGAGATTGGAGCTGGAGGATATGGGAAGGTCTATAGAGGAATTACTGGGTATGGACAAGTTTTCGCAATCAAAAGAGCTAGGCAAGGCTCGAAACAGGGTGCACATGAGTTTAAGACTGAGATTGAATTGCTTTCACGAGTTCATCATAAGAATCTCGTTGGCCTTGTAGGATTTTGTTGTGAACAGGGAGAACAGATGCTTGTTTATGAATTCATGCCTTATGGATCGCTTCGTGACATCCTTGGGAGTTGTGTCCATCTTGATTGGAAGAGAAGACTTGAGATAGCACTTGACTCTGCAAGAGGACTAGCTTACCTTCACGAGTTTGCAAATCCTCCAATAATCCATAGAGATATTAAGTCCTCCAATATTCTTTTAGATGAATATTTTAATGCGAAGGTTGCAGATTTTGGCCTGTCCAAGCTTGTATTTGACCATGAAAAGGGACATATTTCTACTGGAGTTAAAGGCACGTGGGGGTATTTAGATCCTGAATATTACACAACGCAACGATTAACTGAGAAGAGTGATGTGTACAGCTTTGGAGTTGTTATGCTTGAATTGATTACTTCTAATCGGCCAATTGAGAAAGGGATATATTTAGTTCATGAAGTGGTTCGACTAATGAACAAGAGCGACAAAGCATATTACGGATTGATGAATATAATAGATGCAACTGTTATAAATGAGATGACAAATCCAATTGAATTTGGAAGGTTTTTAAAGTTGGCCATAAAATGTGTTGAAGAATCAACTATAAATCGCCCCACGATGAGCCAAGTGGTGAAAGAAATTGAAAGGATTAAAACAATGAGAGTCATATTTCGTAGAATTTGTTATCAAGTTATTTTTAGCATCTCAGAATCTGCAGTAAATGATGCTGGAATTGCGGGTTTCAGTAAAGGCAGTGCATGCAAGCACTGTGAGAAGCAGAATCATCCTCACTTTAGATGCTGGAGAACGCCAGATGTGAAGTGTAAAAGGTGTCATTTAATGGGGCACATTGAAGGGTTCCGTAGGAGAACTTAG 2988 39.63 MAMFSVKARLFLAFFFVIGIHNIFSYTDPNDVEILLSLKEVWKNTPPTWRTSSDPCGDLWEGVSCNDSRVTELKLPYMGLEGHLSGDIGGLTELITLDLSFNRYLTGPLSPRLGDLRNLKTLILAACGFSGNIPQELGNLTQLMSLALNSNQLIGSIPRSLGKLSKLVLLDLMENQLNGSLPVSTFDSPGLDLLLQAKHFHLSKNRLSGSIPPKLFSADMKLIHIVFDQNQFSGSIPQTLGLVNTLELLRLDRNSLTGIVPSDLTNLKQILQLNLAHNNLTGPLPNLTQMTSLCVVDLSYNSFDASTAPDWFSSLPSLTSLIVEYGELEGPVPETIFSLPQIQQIIWYRKLGHNLFGGILRMGGNISQHLELVNLEDNHITQFELLSGYNKTLMLEGNPACNNNVDPLVKQNHYCLPNSQPADLKPNFGSPVLNCETRLCSNGEKNNPQNCECQYPFVGSFYFRGPSIRDLSNDTLFQLLKYSLSNKLNLSIASVVIQKPVFESDDYLHIQLQLFPPFGKYFNRSEILRIASALSYQTFLLSPDLGSFYFIPLDQYNFLGKSPPDVGNFSSISNRWLIGIAIGCGLLLLTLFGVGVYAIKQKKRVSKAISLSKPFASWSSIEQITGEAPQLKGAIYFSYDELRKLTNNFSISNEIGAGGYGKVYRGITGYGQVFAIKRARQGSKQGAHEFKTEIELLSRVHHKNLVGLVGFCCEQGEQMLVYEFMPYGSLRDILGSCVHLDWKRRLEIALDSARGLAYLHEFANPPIIHRDIKSSNILLDEYFNAKVADFGLSKLVFDHEKGHISTGVKGTWGYLDPEYYTTQRLTEKSDVYSFGVVMLELITSNRPIEKGIYLVHEVVRLMNKSDKAYYGLMNIIDATVINEMTNPIEFGRFLKLAIKCVEESTINRPTMSQVVKEIERIKTMRVIFRRICYQVIFSISESAVNDAGIAGFSKGSACKHCEKQNHPHFRCWRTPDVKCKRCHLMGHIEGFRRRT 995
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 51609 68850 - ClCG02G000020.2 Cla02g00002 266128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00002 995 Gene3D Ribonuclease Inhibitor 188 285 IPR032675 -
Cla02g00002 995 ProSitePatterns Protein kinases ATP-binding region signature. 655 677 IPR017441 GO:0005524
Cla02g00002 995 PANTHER LRR RECEPTOR-LIKE KINASE 8 925 - -
Cla02g00002 995 SUPERFAMILY L domain-like 34 285 - -
Cla02g00002 995 Gene3D Transferase(Phosphotransferase) domain 1 725 932 - -
Cla02g00002 995 SUPERFAMILY Protein kinase-like (PK-like) 636 939 IPR011009 -
Cla02g00002 995 Gene3D Ribonuclease Inhibitor 29 187 IPR032675 -
Cla02g00002 995 Pfam Leucine rich repeat N-terminal domain 29 66 IPR013210 -
Cla02g00002 995 Gene3D Phosphorylase Kinase; domain 1 616 724 - -
Cla02g00002 995 ProSiteProfiles Protein kinase domain profile. 649 921 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla02g00002 995 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 8 925 - -
Cla02g00002 995 CDD STKc_IRAK 655 921 - -
Cla02g00002 995 SUPERFAMILY L domain-like 289 401 - -
Cla02g00002 995 Gene3D Ribonuclease Inhibitor 286 421 IPR032675 -
Cla02g00002 995 ProSitePatterns Serine/Threonine protein kinases active-site signature. 767 779 IPR008271 GO:0004672|GO:0006468
Cla02g00002 995 SMART serkin_6 649 927 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla02g00002 995 Pfam Protein tyrosine and serine/threonine kinase 651 917 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00002 Cla-Chr2:51609 Cla10g01257 Cla-Chr10:27428139 0 dispersed
Cla02g00002 Cla-Chr2:51609 Cla10g02161 Cla-Chr10:37221640 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80314 PF07714 PK_Tyr_Ser-Thr 2.20E-44 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00002 - - csv:101220026 1079.7