Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00011 ATGGAACAAAACCCAGCATTCCATTTTGTGAAAAATCTAAGATTTGTTGTCATCCAAACAGGGAATATGGATAGTGCATTCATGTCCAGTGGAGAAGTGGAAGCTTCTTTGACTCTTTTAAAGGGATTTGGGAAAGTAAAGCAAAGCAAAGGTGGAGGTGTTTCCCATGATTGGATTAGTTTATTTAACATTGTCTCCTGCTTCTGTTTCTCTAGCATGATCCATTCTTCTTTGCTTGCAGCTTTTGCAGCCTCAGAAGCCATGCCTCTTTCTAAAGGAGGTACTCCTATGTTTTCAATGCTTTATAGATGGAACCCCTTAAGACTGATCATTCAGGGGCTGCTACTGTTCTCATTGTTGAGGTCGAATCATGCATCAACGGATCCTGATGTGGAAGGAGAAGCTTTGGTTGACTTGTTAGGGGCACTGAATGATTCCAATCATCAGATTACTGATTGGAATTATCATCTTGTAAGCCCTTGCTTTAGTTGGTCGCATATTACCTGCCGAAATGGAAATGTCATATCCTTGAGCTTGGGTTCAGTAGGATTTTCAGGATCACTTTCTCCCTCAATTACCAAACTGAAGTATTTGGCTAGCCTGGATTTGCAGAAGAATAATATAGCTGGTGTTATACCAGATTATCTAGCTAACATGACCCACCTACAGAATTTGAATCTTGCTAATAATAACTTCAATGGCCCTATACCTGCAGCTTGGGATCGACTTGTCGGTCTAAAGCATCTGGATCTCTCAGATAACAACTTAACAGGAGAAGTTCCAGCGCAGTTCTTTTCAATTCCAATGTTCAACTTTTCAGGAACTGGTTTAAATTGTGGGTTTAGGTTGGATAAACCTTGTGTTTCGACATCTCCCCATCGAGCTTCTGCAAAGAATTCAAAGTTTGGGGTAGTGGCGAGTACTGCAAGTTGTGGGGGTTTCATACTTCTGTCAATTGGTGCCTTCTTTGCTTATAGATGCTTCTACGTGCATAAGCTTAAGGATCCTATGTTTGTTGATGTTGCTGGTGAAGATGAATGTAAACTTTGCTTTGGGCAAATCAGAAGATTTTCATTGCGGGAAATCCAACTTGCTACCGATAACTTTAACGAAGCAAACATCATTGGCCAAGGAGGCTTTGGAAAAGTATATAAAGGCATCCTCTCGGATGCCTCCAAGGTGGCTGTGAAACGGTTAACAGACTACAATAGTCCTGGCGGGGAGGCTGCCTTCCTAAGAGAAGTTCAACTAATAAGCGTTGCGGTGCATAGAAATCTCCTCCGGTTGATTGGGTTCTGCACAACCACATCTGAGAGAATCCTCGTTTATCCATTCATGCAGAATCTTAGCGTGGCACATCGCCTGAGAGATTTAAAACCTGGAGAAAGAAGCTTGGACTGGGCCACGAGGAAACGAATTGCTTTCGGTGCAGCTCATGGTTTGGAGTATTTGCATGAGCACTGTAATCCTAAGATCATTCATCGCGATCTGAAGGCTGCGAATATCTTATTAGACGATGACTTTGAAGCTGTTCTTGGAGATTTCGGGCTGGCTAAGCTAGTTGATACTAAAGTCACTCATATTACCACTCAAGTGCGTGGTACGATGGGTCACATTGCCCCAGAATACCTGTCCACTGGAAAGTCGTCCGAAAAGACAGATGTTTTTGGATATGGTATCACCCTTCTTGAACTTGTCACTGGCCAGCGAGCAATAGATTTCTCCCGCCTCGAAGAGGAGGAAGATGTTCTTCTACTTGATCATATAAAGAAGTTGCAGAGGGAGAATAGGCTTGAAGATGTGGTGGACAAAAACTTAAGAAGCTACGATGAGAAAGAAGTCGAAAACATAGTTCAGGTGGCACTGCTTTGCACTCAAAGCTCACCCGAGGACCGACCCACAATGGCGGAAGTTGTGAATCTACTACATGGAGAAGGGCTGGCAGATAGGTGGGCAGAGTGGATGCAGCTTGAAGAGGTAAGAGATCAGGAAGTTTCCCTCTTGTGTCACCAATTTGTTTGGGGTGAAGAGTCAAGTCATGATCAAGAAGCCATACAGTTGTCTAAAGCCAGATAG 2076 43.3 MEQNPAFHFVKNLRFVVIQTGNMDSAFMSSGEVEASLTLLKGFGKVKQSKGGGVSHDWISLFNIVSCFCFSSMIHSSLLAAFAASEAMPLSKGGTPMFSMLYRWNPLRLIIQGLLLFSLLRSNHASTDPDVEGEALVDLLGALNDSNHQITDWNYHLVSPCFSWSHITCRNGNVISLSLGSVGFSGSLSPSITKLKYLASLDLQKNNIAGVIPDYLANMTHLQNLNLANNNFNGPIPAAWDRLVGLKHLDLSDNNLTGEVPAQFFSIPMFNFSGTGLNCGFRLDKPCVSTSPHRASAKNSKFGVVASTASCGGFILLSIGAFFAYRCFYVHKLKDPMFVDVAGEDECKLCFGQIRRFSLREIQLATDNFNEANIIGQGGFGKVYKGILSDASKVAVKRLTDYNSPGGEAAFLREVQLISVAVHRNLLRLIGFCTTTSERILVYPFMQNLSVAHRLRDLKPGERSLDWATRKRIAFGAAHGLEYLHEHCNPKIIHRDLKAANILLDDDFEAVLGDFGLAKLVDTKVTHITTQVRGTMGHIAPEYLSTGKSSEKTDVFGYGITLLELVTGQRAIDFSRLEEEEDVLLLDHIKKLQRENRLEDVVDKNLRSYDEKEVENIVQVALLCTQSSPEDRPTMAEVVNLLHGEGLADRWAEWMQLEEVRDQEVSLLCHQFVWGEESSHDQEAIQLSKAR 691
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 154226 161413 - ClCG02G000110.1 Cla02g00011 266137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00011 691 SUPERFAMILY L domain-like 133 268 - -
Cla02g00011 691 Pfam Leucine rich repeat N-terminal domain 131 169 IPR013210 -
Cla02g00011 691 Gene3D Phosphorylase Kinase; domain 1 338 445 - -
Cla02g00011 691 Pfam Protein kinase domain 370 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla02g00011 691 ProSiteProfiles Protein kinase domain profile. 369 655 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla02g00011 691 Gene3D Ribonuclease Inhibitor 129 289 IPR032675 -
Cla02g00011 691 Pfam Leucine rich repeat 198 256 IPR001611 GO:0005515
Cla02g00011 691 Gene3D Transferase(Phosphotransferase) domain 1 446 662 - -
Cla02g00011 691 PANTHER LRR RECEPTOR-LIKE KINASE 114 691 - -
Cla02g00011 691 SUPERFAMILY Protein kinase-like (PK-like) 350 642 IPR011009 -
Cla02g00011 691 SMART serkin_6 369 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla02g00011 691 ProSitePatterns Protein kinases ATP-binding region signature. 375 397 IPR017441 GO:0005524
Cla02g00011 691 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 114 691 - -
Cla02g00011 691 ProSitePatterns Serine/Threonine protein kinases active-site signature. 492 504 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00011 Cla-Chr2:154226 Cla07g00886 Cla-Chr7:24514741 0 dispersed
Cla07g01653 Cla-Chr7:33796996 Cla02g00011 Cla-Chr2:154226 4.40E-33 dispersed
Cla02g00011 Cla-Chr2:154226 Cla05g02357 Cla-Chr5:35159817 8.48E-167 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80315 PF00069 Pkinase 5.40E-45 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00011 - - bhj:120088289 1196.03