Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00024 ATGGGGAAAGGACCGTTTTCTTTCCGCCGGAGCAGTAGTCGCCGCCGCCCTAAGAAGGCGGTTCATTCGTCACCGTCCTCGTCGCCACAGCCACCTCCGCAGATTAGCACCAGTTCTCCTCCCATTAACAATAATGGGAATGGCTTGGTTGGTGGTGGGGGTGGTGGGGTTGTGGGAAAAGTGAAGAAGAAGGCCGGAGGAGCTAGGCTGTGGATGCGTCTCGACAGGTGGGGGCAAGCGGAGCTTTTAGAGTGGGACAAGAATGCTATAATCCGACGTGCTGCAATTCCGGCTAGGGATTTGAGGATTCTTGGTCCTGTTTTCTCACACTCATCTAGCATACTCGCCAGCGAAAAGGCCATGGTTGTTCATTTAGAGTTCATAAAAGCTATAGTTACTGCTGAAGAAGTCCTATTACTTCACCCTCTTCGCCAAGAGGTTATTCCATTTGTAGATCAGCTAAGGAAGCTACTTGCTAAGACGGGTTCATCTCAACTTGAAAATGATGGGAATGTTTCGAGAGGAGGAAAGTGGTTGCCAGTTTCAGAAGCTGCTGAAGGTGAGCAGTATGAGCTCCCGTTTGAGTTTCAGGTTCTGGAAAATGCTTTGGAGGTTGTGTGCATGTACTTGGATTCCAGTGTGGCAGACCTTGAGAGAGACGCTTATCCAGTTCTGGATGAACTGGCTAGGAATGTCAGCACCAAGAATCTAGAACGTGTGAGGAGTTTGAAAAGTAATCTTACCCGTATTCTTGCACGTGTTCAGAAGGTGCGGGATGAGATAGAACATCTATTAGATGATAATGAAGATATGGCACAACTATATTTGACAAGGAAATGGATGCAGAATCAACAATTTGATACTTTGCCGGGAGGTGTGGCTTCCAACAGCACGACTGCTATCGTTCCTCATCTTCGTCTACTTAGTTCCACCAGGAGTGGCAGTGTGGTGACCAGCAACCTTTTGGATGATAATGACGTAGAGGACTTGGAGATGTTGCTCGAGGCATACTTTATGCAGTTGGATGGGACTCGTAACAGGATATTATCGGTTAGGGAATACATCGATGACACCGAGGATTATGTTAATATTCAACTTGACAACCAAAGAAATGAACTTATTCAGTTTCAGTTAACCCTGACAATTGCTTCATTTGCCCATAGCTGTTGA 1170 46.67 MGKGPFSFRRSSSRRRPKKAVHSSPSSSPQPPPQISTSSPPINNNGNGLVGGGGGGVVGKVKKKAGGARLWMRLDRWGQAELLEWDKNAIIRRAAIPARDLRILGPVFSHSSSILASEKAMVVHLEFIKAIVTAEEVLLLHPLRQEVIPFVDQLRKLLAKTGSSQLENDGNVSRGGKWLPVSEAAEGEQYELPFEFQVLENALEVVCMYLDSSVADLERDAYPVLDELARNVSTKNLERVRSLKSNLTRILARVQKVRDEIEHLLDDNEDMAQLYLTRKWMQNQQFDTLPGGVASNSTTAIVPHLRLLSSTRSGSVVTSNLLDDNDVEDLEMLLEAYFMQLDGTRNRILSVREYIDDTEDYVNIQLDNQRNELIQFQLTLTIASFAHSC 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 292387 297175 - ClCG02G000240.2 Cla02g00024 266150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00024 389 Gene3D - 59 141 - -
Cla02g00024 389 CDD Mrs2_Mfm1p-like 71 386 IPR039204 -
Cla02g00024 389 Coils Coil 240 274 - -
Cla02g00024 389 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 5 386 IPR039204 -
Cla02g00024 389 PANTHER MAGNESIUM TRANSPORTER MRS2-4-RELATED 5 386 - -
Cla02g00024 389 Gene3D Magnesium transport protein CorA, transmembrane region 144 373 - -
Cla02g00024 389 MobiDBLite consensus disorder prediction 1 55 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00024 Cla-Chr2:292387 Cla05g01020 Cla-Chr5:10383588 0 dispersed
Cla02g00024 Cla-Chr2:292387 Cla06g00628 Cla-Chr6:7704903 1.93E-80 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00024 K16075 - csv:101203496 617.076