Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00024 ATGGGGAAAGGACCGTTTTCTTTCCGCCGGAGCAGTAGTCGCCGCCGCCCTAAGAAGGCGGTTCATTCGTCACCGTCCTCGTCGCCACAGCCACCTCCGCAGATTAGCACCAGTTCTCCTCCCATTAACAATAATGGGAATGGCTTGGTTGGTGGTGGGGGTGGTGGGGTTGTGGGAAAAGTGAAGAAGAAGGCCGGAGGAGCTAGGCTGTGGATGCGTCTCGACAGGTGGGGGCAAGCGGAGCTTTTAGAGTGGGACAAGAATGCTATAATCCGACGTGCTGCAATTCCGGCTAGGGATTTGAGGATTCTTGGTCCTGTTTTCTCACACTCATCTAGCATACTCGCCAGCGAAAAGGCCATGGTTGTTCATTTAGAGTTCATAAAAGCTATAGTTACTGCTGAAGAAGTCCTATTACTTCACCCTCTTCGCCAAGAGGTTATTCCATTTGTAGATCAGCTAAGGAAGCTACTTGCTAAGACGGGTTCATCTCAACTTGAAAATGATGGGAATGTTTCGAGAGGAGGAAAGTGGTTGCCAGTTTCAGAAGCTGCTGAAGGTGAGCAGTATGAGCTCCCGTTTGAGTTTCAGGTTCTGGAAAATGCTTTGGAGGTTGTGTGCATGTACTTGGATTCCAGTGTGGCAGACCTTGAGAGAGACGCTTATCCAGTTCTGGATGAACTGGCTAGGAATGTCAGCACCAAGAATCTAGAACGTGTGAGGAGTTTGAAAAGTAATCTTACCCGTATTCTTGCACGTGTTCAGAAGGTGCGGGATGAGATAGAACATCTATTAGATGATAATGAAGATATGGCACAACTATATTTGACAAGGAAATGGATGCAGAATCAACAATTTGATACTTTGCCGGGAGGTGTGGCTTCCAACAGCACGACTGCTATCGTTCCTCATCTTCGTCTACTTAGTTCCACCAGGAGTGGCAGTGTGGTGACCAGCAACCTTTTGGATGATAATGACGTAGAGGACTTGGAGATGTTGCTCGAGGCATACTTTATGCAGTTGGATGGGACTCGTAACAGGATATTATCGGTTAGGGAATACATCGATGACACCGAGGATTATGTTAATATTCAACTTGACAACCAAAGAAATGAACTTATTCAGTTTCAGTTAACCCTGACAATTGCTTCATTTGCCCATAGCTGTTGA 1170 46.67 MGKGPFSFRRSSSRRRPKKAVHSSPSSSPQPPPQISTSSPPINNNGNGLVGGGGGGVVGKVKKKAGGARLWMRLDRWGQAELLEWDKNAIIRRAAIPARDLRILGPVFSHSSSILASEKAMVVHLEFIKAIVTAEEVLLLHPLRQEVIPFVDQLRKLLAKTGSSQLENDGNVSRGGKWLPVSEAAEGEQYELPFEFQVLENALEVVCMYLDSSVADLERDAYPVLDELARNVSTKNLERVRSLKSNLTRILARVQKVRDEIEHLLDDNEDMAQLYLTRKWMQNQQFDTLPGGVASNSTTAIVPHLRLLSSTRSGSVVTSNLLDDNDVEDLEMLLEAYFMQLDGTRNRILSVREYIDDTEDYVNIQLDNQRNELIQFQLTLTIASFAHSC 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 292387 297175 - ClCG02G000240.2 Cla02g00024 266150

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00024 389 Gene3D - 59 141 - -
Cla02g00024 389 CDD Mrs2_Mfm1p-like 71 386 IPR039204 -
Cla02g00024 389 Coils Coil 240 274 - -
Cla02g00024 389 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 5 386 IPR039204 -
Cla02g00024 389 PANTHER MAGNESIUM TRANSPORTER MRS2-4-RELATED 5 386 - -
Cla02g00024 389 Gene3D Magnesium transport protein CorA, transmembrane region 144 373 - -
Cla02g00024 389 MobiDBLite consensus disorder prediction 1 55 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00024 K16075 MRS2, MFM1; magnesium transporter - csv:101203496 617.076
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00024 Cla-Chr2:292387 Cla05g01020 Cla-Chr5:10383588 0 dispersed
Cla02g00024 Cla-Chr2:292387 Cla06g00628 Cla-Chr6:7704903 1.93E-80 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi7g1277 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla02g00024 Cam02g0026 Cec02g0026 Cco02g0023 Clacu02g0026 Cmu02g0026 Cre02g0369 . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla10g01225 . 1 458 MRS2 Gene Family AT1G16010 79.3 7.2e-191 663.7
Cla08g01046 . 129 520 MRS2 Gene Family AT1G16010 51.9 5.3e-109 391.7
Cla06g00628 . 1 365 MRS2 Gene Family AT5G64560 81.0 1.4e-158 556.2
Cla07g00057 . 790 1110 MRS2 Gene Family AT5G64560 66.7 2.1e-106 382.9
Cla02g00695 . 14 501 MRS2 Gene Family AT3G19640 64.4 5.3e-155 544.7
Cla05g01020 . 59 442 MRS2 Gene Family AT3G58970 70.3 7.9e-142 500.7
Cla02g00024 . 59 386 MRS2 Gene Family AT3G58970 69.9 4.4e-116 415.2
Cla08g01046 . 146 520 MRS2 Gene Family AT2G03620 68.4 4.4e-137 485.0
Cla10g01225 . 13 458 MRS2 Gene Family AT2G03620 50.9 1.7e-104 376.7
Cla05g01020 . 59 441 MRS2 Gene Family AT4G28580 50.4 1.1e-92 337.4
Cla06g00628 . 1 327 MRS2 Gene Family AT5G09690 76.1 4.1e-127 451.4
Cla07g00057 . 790 1110 MRS2 Gene Family AT5G09690 62.1 2.3e-101 365.9
Cla06g00628 . 23 287 MRS2 Gene Family AT5G09720 68.3 1.8e-89 326.2
Cla07g00057 . 825 1073 MRS2 Gene Family AT5G09720 59.0 9.3e-70 260.8
Cla10g01225 . 1 458 MRS2 Gene Family AT1G80900 78.6 2.2e-187 652.1
Cla08g01046 . 129 520 MRS2 Gene Family AT1G80900 53.4 1.7e-107 386.7
Cla01g01385 . 16 455 MRS2 Gene Family AT5G22830 68.8 2.4e-157 552.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003636 0 2 1 1 1 2 2 2 2 1 2 1 2 1 1 2 2 2 2 1 1 1 2 2 1 1 1 5 2 1 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla02g00024 Cla_Chr02 FPKM 17.086449 19.670185 2.865509 1.692282 1.368188 1.819472 1.389184 1.616036 1.484633 1.642995