Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00027 ATGGCCACTAGGCTTATGTTTGAGAACTCATGTGAAATTGGGGTTTTCTCCAAGCTCACTAATGCTTACTGCCTGGTTGCAATTGGTGGCTCTGAGAATTTCTACAGTACGTTCGAAACTGAATTAGGTGGTGTCATTCCGGTCGTTAAAACATCTATTGATGGCACTCGCATTATTGGCCGTCTATGTGCTGGAAACAAAAATGGGCTTCTTGTACCACACACCACTACTGACCAAGAACTTCAGCACTTGAGGAACAGCCTACCTGACCAAGTTGTTGTTCAACGTATACAAGAGAGATTGTCTGCTCTGGGGAATACCATTGCTTGTAATGATCATGTTGCTCTCACACATACTGATCTTGATCGGGAAACTGAAGAGCTCATTGCTGATGTTCTTGGAGTGGAGGTCTTTAGGCAGACAGTAGCGGGCAACGTCCTTGTGGGAAGCTACTGTAGCTTCACGAATAGGGGTGGCTTGGTTCATCCACATACGTCTGTTGAAGATCTGGATGAGCTATCAACCCTTCTTCAGGTCCCTTTAGTTGCTGGAACCGTGAATCGTGGAAGTGAAGTGATTGCTGCTGGATTGACAGCAAATGATTGGACCGCGTTTTGTGGTTCAGACACCACGGCCACCGAGTTATCGGTCATCGAGAGCGTTTTCAAATTGAGGGAGGCTCAACCAAGTTCCATTGTTGAAGAAATGAGGAAGTCGCTAATAGATAGTTACGTATGA 738 45.8 MATRLMFENSCEIGVFSKLTNAYCLVAIGGSENFYSTFETELGGVIPVVKTSIDGTRIIGRLCAGNKNGLLVPHTTTDQELQHLRNSLPDQVVVQRIQERLSALGNTIACNDHVALTHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCSFTNRGGLVHPHTSVEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTANDWTAFCGSDTTATELSVIESVFKLREAQPSSIVEEMRKSLIDSYV 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 330770 333749 + ClCG02G000260.2 Cla02g00027 266153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00027 245 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 1 245 - -
Cla02g00027 245 Hamap Translation initiation factor 6 [eif6]. 1 245 IPR002769 GO:0042256|GO:0043022
Cla02g00027 245 TIGRFAM eIF-6: putative translation initiation factor eIF-6 4 224 IPR002769 GO:0042256|GO:0043022
Cla02g00027 245 CDD IF6 2 223 IPR002769 GO:0042256|GO:0043022
Cla02g00027 245 Pfam eIF-6 family 4 203 IPR002769 GO:0042256|GO:0043022
Cla02g00027 245 Gene3D - 1 225 - -
Cla02g00027 245 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 1 245 IPR002769 GO:0042256|GO:0043022
Cla02g00027 245 SUPERFAMILY Pentein 1 224 - -
Cla02g00027 245 SMART eIF6neu2 3 204 IPR002769 GO:0042256|GO:0043022
Cla02g00027 245 PIRSF Transl_init_IF-6 1 226 IPR002769 GO:0042256|GO:0043022
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00027 Cla-Chr2:330770 Cla06g01193 Cla-Chr6:25137219 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00027 K03264 - csv:101212091 462.225