Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00030 ATGATGCTGCTCGCTGACCCCGCCGCTCCCCTCGGCGGCTCTGTGGTCGTCGTCGGGGTCAAAATGGATTCCCAGAGTCGGGAATTGCTCACTTGGGCGCTTGTTAAAGTCGCTCAGCCTGGGGATTGCGTCATTGCTCTTCATGTCCTTGATTCTGCCGCTGTTTCTGAGGGGAAATCGACTTTGCTTTCTCTTGTTAAGTCGTTTGACTCGGTGTTGTCCGCTTACGAAGGATTCTGCAACCTGAAGCAGGTTGATTTGAAGCTCAAGGTCTGCCGAGGCTCGCCTGTTCGGAAAATCATTAGACGGGAAGTGGATTCTTACGGCGAGGCTTCACTAATTCTCGGTACTTCTAAAACTCACCATAGAATCCGTTCCTCGGCCTCGGTTGCTAAGTACTGCGCTAGAAAATTGTCGAGCAGATTCAGTGTTTTAGCTGTTAATAATGGCAAAGTTATTTTCCAGAGATTAGCGACGTTCCCAAATAAAGGCCAGTCTCGAGCAGACAAGGATGGGGACAAGAATTGTGCTGCCATTGTGGAAGTAACTAATGAAACAAAAGCTGTTGGGTTGGCTACAAACTTTTTCGATAGTCATCGGTGTATACAGAAATCTGACTCTGGTTGTAATGATAAAACGGAGAGGGACTGTATTGAGGGTGCTCCATCTTTGCTTGAACGGAACGATTCAGGAATTGATTTGGTGGGTGAGTTACCTGAGGACAATGATGTGGGGAATTCATTGGCTTTGGTACCATTTCATAAGCCTCAGGGAATTTTGAAGTCAAATTCCATTGTGACCCGAGAATCGTCACATTGGAAATCGAGTTGGCCGCTTCTTAGACGGATATTCTTGTCCAAGCACCAGGCAGAGAAATCTGCAAAGAAGTTTTCTATGTTCCAAGGTGTATTGCACATACCAAATTTCCAGTCGTCCTCGGCTTTGGTTTATCCAGATCAGAAACAGAACAGTTCTGATCAGGATCAGGGTTCCACCATTGATGGAGAGTGTGGTGCAATTGTGCCATATGGGTCCAGCCACATTTTGGAAAGTCTTCCTAAAGAGGTATTGGATTTGAAGGATAAATACTCATCCACCTGCAGATTGTTTACTTCTGAGGAACTTTTGTTGGCAACGTCTAATTTTATGCCTGAGAATCTGGTTGGTAAAGGAGGTAGTAGCTATGTTTACCGAGGGCTTCTTCCTGATGGCAAGGAAATTGCTGTCAAAATTTTGAAGCCATCCGAGAATGTGCTAAAGGAGTTTGTTCAGGAAGTTGGGATCATTGCAACTTCAACTCATAAGAATATTATATCTTTAATAGGTTTTTGTTTGGAGGACAATAATTTACTGTTGGTCTATGATTTTCTTTCAAGAGGAAGTATGGAAGAAAATCTTCATGGTTGTAAGAAGGATGTGGATTCATTTGGTTGGCCAGAGAGGTTTAAGGTTGCAGTTGGTGTTGCTGAGGCACTAGACTATCTACACAATTGCAGGGAGGAACCTGTGATTCACCGGGATGTGAAGTCCTCTAACATTCTGCTTTCAGAGAATTACGAACCACAGCTTTCCGATTTTGGGCTTGCTAGTTGGGCATCATCGTGCTTTCAAATTACTTGTACTGACGTAGCTGGAACGTTTGGTTACTTGGCTCCTGAGTATTTCATGCACGGCAAAGTGAGTGACAAAATTGACGTCTATGCCTTTGGTGTGGTACTCCTTGAACTACTTTCAGGTAGAAAACCGATCAGCAACAATTGTCCCAAGGGGCAGGAGAGCCTTGTCATTCGATTCTTCTGTACTTTGCTCAAAGTTGTGTATGGAACTGATGTAACAAATGTACTACAGGCAAAGCCAATTTTGACGGAAGGCAAAGTTTCACAATTACTAGATCCAAGCCTAGGCAGTGACTACAACCACGATCAAATAGGTCGAATGATTTTGGCTGCTACCCTTTGTATTAGACGAGCACCAAGACTCCGCCCTCAAATCAGCCTGGTACTGAAACTTCTCCAAGGCGACGAGGAAATAACAACATGGGCAAGACAACAAATCGAAGAATCGGACGAATTGGATGCGAGTGATGGAGAACCTCTGCCTACCAACATCCAGTCACATCTTAACCTAGCCTTACTTGGCTTGGAGGATGACTCACTTTCTGTTGGCAGTGGAATACAAAGCATCTCCATAGAGGACTACTTGCAGGGCAGATGCAGCCGCTCTTCCAGCTTTAACTAG 2238 44.77 MMLLADPAAPLGGSVVVVGVKMDSQSRELLTWALVKVAQPGDCVIALHVLDSAAVSEGKSTLLSLVKSFDSVLSAYEGFCNLKQVDLKLKVCRGSPVRKIIRREVDSYGEASLILGTSKTHHRIRSSASVAKYCARKLSSRFSVLAVNNGKVIFQRLATFPNKGQSRADKDGDKNCAAIVEVTNETKAVGLATNFFDSHRCIQKSDSGCNDKTERDCIEGAPSLLERNDSGIDLVGELPEDNDVGNSLALVPFHKPQGILKSNSIVTRESSHWKSSWPLLRRIFLSKHQAEKSAKKFSMFQGVLHIPNFQSSSALVYPDQKQNSSDQDQGSTIDGECGAIVPYGSSHILESLPKEVLDLKDKYSSTCRLFTSEELLLATSNFMPENLVGKGGSSYVYRGLLPDGKEIAVKILKPSENVLKEFVQEVGIIATSTHKNIISLIGFCLEDNNLLLVYDFLSRGSMEENLHGCKKDVDSFGWPERFKVAVGVAEALDYLHNCREEPVIHRDVKSSNILLSENYEPQLSDFGLASWASSCFQITCTDVAGTFGYLAPEYFMHGKVSDKIDVYAFGVVLLELLSGRKPISNNCPKGQESLVIRFFCTLLKVVYGTDVTNVLQAKPILTEGKVSQLLDPSLGSDYNHDQIGRMILAATLCIRRAPRLRPQISLVLKLLQGDEEITTWARQQIEESDELDASDGEPLPTNIQSHLNLALLGLEDDSLSVGSGIQSISIEDYLQGRCSRSSSFN 745
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 381979 385245 + ClCG02G000290.1 Cla02g00030 266156

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00030 745 Gene3D Phosphorylase Kinase; domain 1 347 456 - -
Cla02g00030 745 CDD USP_Like 23 147 - -
Cla02g00030 745 SUPERFAMILY Protein kinase-like (PK-like) 363 674 IPR011009 -
Cla02g00030 745 Gene3D Transferase(Phosphotransferase) domain 1 457 690 - -
Cla02g00030 745 ProSitePatterns Protein kinases ATP-binding region signature. 388 410 IPR017441 GO:0005524
Cla02g00030 745 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASE-LIKE DOMAIN KINASE 10 739 - -
Cla02g00030 745 Pfam Universal stress protein family 16 139 IPR006016 -
Cla02g00030 745 SMART serkin_6 382 643 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla02g00030 745 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 16 148 - -
Cla02g00030 745 Gene3D - 16 186 - -
Cla02g00030 745 ProSiteProfiles Protein kinase domain profile. 382 677 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla02g00030 745 PANTHER OS01G0253100 PROTEIN 10 739 IPR045271 GO:0004714|GO:0006468
Cla02g00030 745 ProSitePatterns Serine/Threonine protein kinases active-site signature. 503 515 IPR008271 GO:0004672|GO:0006468
Cla02g00030 745 Pfam Protein kinase domain 385 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00030 - - - csv:101216673 1330.85
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00030 Cla-Chr2:381979 Cla08g00627 Cla-Chr8:18303997 0 dispersed
Cla02g01075 Cla-Chr2:22785316 Cla02g00030 Cla-Chr2:381979 4.41E-30 dispersed
Cla02g00030 Cla-Chr2:381979 Cla11g00221 Cla-Chr11:2548037 4.33E-72 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1322 . Blo16g00554 . . . Bpe13g00054 . Bma15g00776 Cmo02g00650 Cmo20g01056 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo06g00187 . . Bpe10g00266 Bpe06g00305 . Bma06g00472 . . . . Cma20g01050 . . Cpe05g01044 Cpe16g00096 Bhi10g01716 . . . . . . Cla02g00030 . . . . . . Lsi10g00758 . . Cme11g00032
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005017 2 1 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 0 1 1 1 0 0 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80317 PF00069 Pkinase 9.50E-42 CL0016 Cla PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla02g00030 Cla_Chr02 FPKM 8.254161 9.479006 7.997709 8.411184 6.76015 7.426424 7.880588 10.973057 11.846906 13.06341