Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00044 ATGGAAGCCATTAGTGGAAATAGCTTCGACTTACTGCCTCCTGGTCTCAGATTCTGCCCAACAGATGAAGATCTTGTGCTTCACTTTCTCTATCACAAAGCTTCTATCTCTTCTACTCACAATTTTTCCAATTCCATCATTCCTCAGCTTCAACTTCATCTCTATAACCCTTGGCAATTCCATGGGAAAGCACTTTCAAATGGGGAGATTCACTACTTTTTCAGCAAAGTGGGAGAAAGTAGAGCAACAGAGAGTGGATATTGGAAAGATGTTTCAATGGATGAGAAAATATTGTGCAGTGGCAATGGAAATGAAGTGGGAATAAAAAAGTATCATATTTTCTTTGTTGGTGAAGAAGATGACTCATCAACTGCCATTCAAACAAGTTGGGTCATGCATGAGTATCACATCTATACCTACCTTTTCAACAACTGCAATCCATCACATACAAAATCAGAGTTTGGATTATGGGTTCTGTGTCGAGTTTTTGAAGCAAAAGACAATACTGGAAGAAGTATGTTTAATTACGAGGAAGATGGTGATAATGAAAGTGAACTTTCATATTTGGATGAAATGTATTTGACAATATTAGAGGATATTTGA 603 37.15 MEAISGNSFDLLPPGLRFCPTDEDLVLHFLYHKASISSTHNFSNSIIPQLQLHLYNPWQFHGKALSNGEIHYFFSKVGESRATESGYWKDVSMDEKILCSGNGNEVGIKKYHIFFVGEEDDSSTAIQTSWVMHEYHIYTYLFNNCNPSHTKSEFGLWVLCRVFEAKDNTGRSMFNYEEDGDNESELSYLDEMYLTILEDI 200
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 485076 487461 + ClCG02G000420.2 Cla02g00044 266170

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00044 200 Pfam No apical meristem (NAM) protein 13 137 IPR003441 GO:0003677|GO:0006355
Cla02g00044 200 Gene3D NAC domain 21 170 IPR036093 GO:0003677|GO:0006355
Cla02g00044 200 PANTHER NAC TRANSCRIPTION FACTOR 56 12 200 - -
Cla02g00044 200 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 12 200 - -
Cla02g00044 200 SUPERFAMILY NAC domain 11 163 IPR036093 GO:0003677|GO:0006355
Cla02g00044 200 ProSiteProfiles NAC domain profile. 12 165 IPR003441 GO:0003677|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00044 - - - csv:101214025 301.982
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00044 Cla-Chr2:485076 Cla09g01295 Cla-Chr9:19816545 6.52E-34 dispersed
Cla02g00044 Cla-Chr2:485076 Cla03g00535 Cla-Chr3:5921564 2.76E-27 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1317 . . . . . . . . Cmo02g00643 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g01390 . . . . Bma06g00491 Sed05g3849 . . . . . . . . Bhi10g01692 Tan07g0845 Cmetu11g1623 . Hepe08g1230 . . Cla02g00044 Cam02g0047 . Cco02g0040 Clacu02g0046 Cmu02g0046 Cre02g0385 Lsi10g00744 . . Cme11g00046
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014205 0 1 0 0 0 1 1 1 0 0 1 1 1 1 1 1 1 0 1 1 1 2 1 0 1 1 1 2 1 0 23
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60556 PF02365 NAM 1.10E-22 No_clan Cla TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla02g00044 Cla_Chr02 FPKM 10.43711 10.87017 4.852487 5.241327 6.030396 5.142023 6.020776 0.0 0.0 0.0