Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00055 ATGGATGCAGAACCTTCGATAACCAATGGCACAGATGATACAATCGTCTGCTATGCGCCCACCATGATTACTACAAATGGGGTTTGGCAAGGAGACAACCCTCTGGATTATTCTCTTCCTCTCTTCATTTTGCAGTTAACAATGGTGGTTTTGATGACTCGCGCTTTGGTTTTCCTCTTAAAACCCTTTCGTCAACCTCGAGTCATCTCTGAAATTTTGGGTGGGGTCATTTTGGGGCCTTCGGTACTAGGGAGAAGTGCTAAATTTGCCAACACCGTATTTCCTTTAAGAAGTGTAATGGTGCTTGAAACAATGGCCAATGTGGGGCTTCTCTACTTTCTGTTCTTGGTTGGTGTGGAGATGGATCTATCAGTGATTCGTCGAACAGGGAAGAAGGCAATGGCAATAGCTGTAGCAGGAATGATTCTTCCGTTTGGAATAGGAGCTGCCTTTTCATTCCAGTTGCACAAAGCAGATCAGAAATTGAACTACAACACTTACGTTATGTTTCTTGGTATTGCGCTCTCCGTGACAGCTTTCCCAGTGCTAGCTAGAATTCTTGCAGAGCTTAAACTGATAAATTCAGAGCTTGGAAGGATGGCCATGGCAGCTGCCCTTTTCAATGATATGTGTGCTTGGGTTCTCTTAGCTTTAGCCATAGCCTTATCTGAGAATGACTCCTCATCCTTGGCTTCTTTATGGGTTGTATTGTCAAGTGTAGGCTTTGTTTTGTTCTGCATCTTCATCGTTAGACCGACGATCTCGTGGATGATTCGAAAAACTCCAGAAGGGGAAAGTGTGAGTGAGTTCTACATTTGTTTGATTCTCACAGGGGTTATGATCTCAGGATTTGTTACAGATGCCATAGGAACACACTCCGTGTTTGGGGCTTTTGTGTTTGGCTTAGTTATCCCAAATGGATCACTTGGGGTGGCTTTAATTGAGAAACTTGAGGATTTTGTTTCAGGGCTTCTGCTCCCTCTTTTCTTTGCAATAAGTGGGCTTAAGACTAATGTGGCTAGCATAGAAGGATTAATCTCTTGGGTATCTATTCTATTTATAACTCTCCTTGCTTTTATTGGCAAAATCATTGGAACTCTTCTTGCCTCCATTTGTTATCAAATGTCCTATCGGGAAGGTGTCACATTAGGCTTGCTTATGAACACCAAGGGCCTTATTGAAATGATCATCCTCAATGTCGGCAAGGACCAAAAGGTGTTAGATGATCAAACATTCACAGTTATGGTGATTGTAGCCCTCGTTATGACCGGGATAATAACACCTGTAGTTACAATAATCTATAGGCCAACAAGAAGGTTTCTACCCTATAAGAAACGAACAATCCAAGTATCAAAGCCAGATTCAGAGTTCAGAGTTTTAGTTTGTATACACACACCTCGAAATGTGCCAACTATCATCCATCTCCTTGATGCCTCCCATCCAACCAAAAGATCCCCAATTTGCATTTATGTGCTACACTTGGTCGAACTCACAGGTCGAGCCTCAGCCATGCTCATTGTCCACAACACCAGAAAATCAGGTCGTCCTGCTTTAAATCGAACCCAAGCTCAATCAGATCACATCATCAATGCATTCGAGAACTACGAACAACACGTCGATTGCGTCTCTGTTCAACCCCTCACAGCCATTTCCCCTTACTCGACAATGCACGAAGACATATGCAATTTAGCCGAGGATAAACGGGTTGCCCTCATAATCATCCCATTCCATAAGCAACAAACAGTCGATGGAGGAATGGAAGCCACAAATCCAGCATTTAGATTGGTTAACCAAAATGTGTTAGCCAATGCCCCTTGCTCCGTCGGAATTCTAGTCGATCGAGGCTTAAACGGCTCGAACCGAGTCGCTTCAAACAAGGCAACTCATTATAACATAATCACGTTGTTCTTTGGTGGACAAGATGATAGAGAAGCCTTATCATACGCATGGAGAATGTCAGAACATCCAGGAGTGAGCTTAACCGTAATGCGATTCATCGCTGCACAAGAAATAATTGAACCAAAACCAGAAGAGGACGCACCAATCGTTTCAGCAATGGAAACAGAAATTAGCAGAGAGAGGAAACTCGATGAAGACTACATAAACGAATTTAGGACAAAGAACCCAAATAGCGAGTCAATTACTTACACAGAGAGAGTGTTGAACAACGGCGAGGAGACAGTGGCGGCCATAAGATCAATGGACGATGCTCACGACCTGTTCATCGTAGGAAGAGGTGAATCTCATGTATCACCTCTCACTGCCGGACTCACAGACTGGAGCGAATGTCCAGAGCTGGGAGCAATCGGTGATTTGTTAGCTTCATCGGATTTTGCAGCGACGACTTCGGTTTTGGTAGTGCAACAGTTCGGAGCAGCAATGGCGGTAGAACATGGAGAAGAAGAAGGTTCACCACGCAACGAAGAACCCATTGATCCCTACCAAAGCCTGAGATCAATGAATTTGAGGCAACATACTCCACCAAGAACTCAAATGATTTATGATACATGA 2511 43.73 MDAEPSITNGTDDTIVCYAPTMITTNGVWQGDNPLDYSLPLFILQLTMVVLMTRALVFLLKPFRQPRVISEILGGVILGPSVLGRSAKFANTVFPLRSVMVLETMANVGLLYFLFLVGVEMDLSVIRRTGKKAMAIAVAGMILPFGIGAAFSFQLHKADQKLNYNTYVMFLGIALSVTAFPVLARILAELKLINSELGRMAMAAALFNDMCAWVLLALAIALSENDSSSLASLWVVLSSVGFVLFCIFIVRPTISWMIRKTPEGESVSEFYICLILTGVMISGFVTDAIGTHSVFGAFVFGLVIPNGSLGVALIEKLEDFVSGLLLPLFFAISGLKTNVASIEGLISWVSILFITLLAFIGKIIGTLLASICYQMSYREGVTLGLLMNTKGLIEMIILNVGKDQKVLDDQTFTVMVIVALVMTGIITPVVTIIYRPTRRFLPYKKRTIQVSKPDSEFRVLVCIHTPRNVPTIIHLLDASHPTKRSPICIYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENYEQHVDCVSVQPLTAISPYSTMHEDICNLAEDKRVALIIIPFHKQQTVDGGMEATNPAFRLVNQNVLANAPCSVGILVDRGLNGSNRVASNKATHYNIITLFFGGQDDREALSYAWRMSEHPGVSLTVMRFIAAQEIIEPKPEEDAPIVSAMETEISRERKLDEDYINEFRTKNPNSESITYTERVLNNGEETVAAIRSMDDAHDLFIVGRGESHVSPLTAGLTDWSECPELGAIGDLLASSDFAATTSVLVVQQFGAAMAVEHGEEEGSPRNEEPIDPYQSLRSMNLRQHTPPRTQMIYDT 836
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 568126 571254 + ClCG02G000535.1 Cla02g00055 266181

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00055 836 Pfam Sodium/hydrogen exchanger family 49 432 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Cla02g00055 836 Gene3D - 41 439 IPR038770 -
Cla02g00055 836 MobiDBLite consensus disorder prediction 817 836 - -
Cla02g00055 836 MobiDBLite consensus disorder prediction 796 836 - -
Cla02g00055 836 Gene3D - 478 758 - -
Cla02g00055 836 PANTHER CATION/H + ANTIPORTER 12 802 - -
Cla02g00055 836 PANTHER BNAA09G08340D PROTEIN 12 802 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00055 - - - csv:101219265 1514.59
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00055 Cla-Chr2:568126 Cla04g00260 Cla-Chr4:8247773 0 dispersed
Cla03g00040 Cla-Chr3:401074 Cla02g00055 Cla-Chr2:568126 2.53E-154 dispersed
Cla05g00944 Cla-Chr5:9369541 Cla02g00055 Cla-Chr2:568126 1.66E-19 dispersed
Cla09g00367 Cla-Chr9:3602276 Cla02g00055 Cla-Chr2:568126 4.35E-104 dispersed
Cla09g01184 Cla-Chr9:14379357 Cla02g00055 Cla-Chr2:568126 1.67E-116 dispersed
Cla10g01460 Cla-Chr10:29825247 Cla02g00055 Cla-Chr2:568126 1.96E-171 dispersed
Cla02g00055 Cla-Chr2:568126 Cla07g00447 Cla-Chr7:6063378 5.21E-171 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla02g00055 . 4 822 Antiporter Super Family AT2G13620 70.6 0.0e+00 1152.5
Cla07g00713 . 11 785 Antiporter Super Family AT2G13620 50.4 4.1e-208 721.8
Cla04g00826 . 78 848 Antiporter Super Family AT3G53720 68.9 3.4e-289 991.1
Cla07g00721 . 86 771 Antiporter Super Family AT3G53720 50.1 1.8e-181 633.3
Cla07g00713 . 83 782 Antiporter Super Family AT3G53720 50.3 2.4e-181 632.9
Cla07g00724 . 1 818 Antiporter Super Family AT5G41610 66.7 6.7e-304 1040.0
Cla07g00721 . 7 774 Antiporter Super Family AT5G41610 68.1 1.7e-299 1025.4
Cla07g00713 . 1 785 Antiporter Super Family AT5G41610 66.7 2.0e-295 1011.9
Cla07g00709 . 1 783 Antiporter Super Family AT5G41610 64.8 4.9e-286 980.7
Cla04g00826 . 10 822 Antiporter Super Family AT5G41610 51.0 3.7e-209 725.3
Cla07g00721 . 11 791 Antiporter Super Family AT4G23700 65.2 9.6e-290 993.0
Cla07g00713 . 10 802 Antiporter Super Family AT4G23700 63.8 2.1e-284 975.3
Cla07g00709 . 11 781 Antiporter Super Family AT4G23700 63.0 2.2e-278 955.3
Cla07g00724 . 9 818 Antiporter Super Family AT4G23700 60.5 3.7e-273 937.9
Cla07g00713 . 9 783 Antiporter Super Family AT3G17630 62.4 1.6e-268 922.5
Cla07g00721 . 7 791 Antiporter Super Family AT3G17630 61.4 3.5e-268 921.4
Cla07g00724 . 5 818 Antiporter Super Family AT3G17630 60.9 1.5e-266 916.0
Cla07g00709 . 7 781 Antiporter Super Family AT3G17630 61.0 4.5e-260 894.4
Cla04g00826 . 10 824 Antiporter Super Family AT3G17630 51.3 2.9e-206 715.7
Cla07g00721 . 1 775 Antiporter Super Family AT1G64170 57.8 5.3e-240 827.8
Cla07g00713 . 11 785 Antiporter Super Family AT1G64170 57.6 1.2e-239 826.6
Cla07g00709 . 12 783 Antiporter Super Family AT1G64170 56.6 4.5e-231 798.1
Cla07g00724 . 15 821 Antiporter Super Family AT1G64170 54.4 5.1e-227 784.6
Cla02g00055 . 4 822 Antiporter Super Family AT2G13620 70.6 0.0e+00 1152.5
Cla07g00713 . 11 785 Antiporter Super Family AT2G13620 50.4 4.1e-208 721.8
Cla07g00721 . 1 775 Antiporter Super Family AT1G64170 57.8 5.3e-240 827.8
Cla07g00713 . 11 785 Antiporter Super Family AT1G64170 57.6 1.2e-239 826.6
Cla07g00709 . 12 783 Antiporter Super Family AT1G64170 56.6 4.5e-231 798.1
Cla07g00724 . 15 821 Antiporter Super Family AT1G64170 54.4 5.1e-227 784.6
Cla07g00721 . 11 791 Antiporter Super Family AT4G23700 65.2 9.6e-290 993.0
Cla07g00713 . 10 802 Antiporter Super Family AT4G23700 63.8 2.1e-284 975.3
Cla07g00709 . 11 781 Antiporter Super Family AT4G23700 63.0 2.2e-278 955.3
Cla07g00724 . 9 818 Antiporter Super Family AT4G23700 60.5 3.7e-273 937.9
Cla07g00724 . 1 818 Antiporter Super Family AT5G41610 66.7 6.7e-304 1040.0
Cla07g00721 . 7 774 Antiporter Super Family AT5G41610 68.1 1.7e-299 1025.4
Cla07g00713 . 1 785 Antiporter Super Family AT5G41610 66.7 2.0e-295 1011.9
Cla07g00709 . 1 783 Antiporter Super Family AT5G41610 64.8 4.9e-286 980.7
Cla04g00826 . 10 822 Antiporter Super Family AT5G41610 51.0 3.7e-209 725.3
Cla07g00713 . 9 783 Antiporter Super Family AT3G17630 62.4 1.6e-268 922.5
Cla07g00721 . 7 791 Antiporter Super Family AT3G17630 61.4 3.5e-268 921.4
Cla07g00724 . 5 818 Antiporter Super Family AT3G17630 60.9 1.5e-266 916.0
Cla07g00709 . 7 781 Antiporter Super Family AT3G17630 61.0 4.5e-260 894.4
Cla04g00826 . 10 824 Antiporter Super Family AT3G17630 51.3 2.9e-206 715.7
Cla04g00826 . 78 848 Antiporter Super Family AT3G53720 68.9 3.4e-289 991.1
Cla07g00721 . 86 771 Antiporter Super Family AT3G53720 50.1 1.8e-181 633.3
Cla07g00713 . 83 782 Antiporter Super Family AT3G53720 50.3 2.4e-181 632.9
Cla09g00367 . 108 838 Antiporter Super Family AT3G52080 54.3 1.0e-227 786.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005878 2 1 2 1 2 1 2 1 0 1 1 0 2 1 1 2 0 3 2 2 1 1 1 1 1 1 1 2 1 2 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla02g00055 Cla_Chr02 FPKM 8.306306 8.583603 10.807534 8.997279 4.747983 5.125431 3.112433 13.539585 16.27656 21.456699