Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00055 ATGGATGCAGAACCTTCGATAACCAATGGCACAGATGATACAATCGTCTGCTATGCGCCCACCATGATTACTACAAATGGGGTTTGGCAAGGAGACAACCCTCTGGATTATTCTCTTCCTCTCTTCATTTTGCAGTTAACAATGGTGGTTTTGATGACTCGCGCTTTGGTTTTCCTCTTAAAACCCTTTCGTCAACCTCGAGTCATCTCTGAAATTTTGGGTGGGGTCATTTTGGGGCCTTCGGTACTAGGGAGAAGTGCTAAATTTGCCAACACCGTATTTCCTTTAAGAAGTGTAATGGTGCTTGAAACAATGGCCAATGTGGGGCTTCTCTACTTTCTGTTCTTGGTTGGTGTGGAGATGGATCTATCAGTGATTCGTCGAACAGGGAAGAAGGCAATGGCAATAGCTGTAGCAGGAATGATTCTTCCGTTTGGAATAGGAGCTGCCTTTTCATTCCAGTTGCACAAAGCAGATCAGAAATTGAACTACAACACTTACGTTATGTTTCTTGGTATTGCGCTCTCCGTGACAGCTTTCCCAGTGCTAGCTAGAATTCTTGCAGAGCTTAAACTGATAAATTCAGAGCTTGGAAGGATGGCCATGGCAGCTGCCCTTTTCAATGATATGTGTGCTTGGGTTCTCTTAGCTTTAGCCATAGCCTTATCTGAGAATGACTCCTCATCCTTGGCTTCTTTATGGGTTGTATTGTCAAGTGTAGGCTTTGTTTTGTTCTGCATCTTCATCGTTAGACCGACGATCTCGTGGATGATTCGAAAAACTCCAGAAGGGGAAAGTGTGAGTGAGTTCTACATTTGTTTGATTCTCACAGGGGTTATGATCTCAGGATTTGTTACAGATGCCATAGGAACACACTCCGTGTTTGGGGCTTTTGTGTTTGGCTTAGTTATCCCAAATGGATCACTTGGGGTGGCTTTAATTGAGAAACTTGAGGATTTTGTTTCAGGGCTTCTGCTCCCTCTTTTCTTTGCAATAAGTGGGCTTAAGACTAATGTGGCTAGCATAGAAGGATTAATCTCTTGGGTATCTATTCTATTTATAACTCTCCTTGCTTTTATTGGCAAAATCATTGGAACTCTTCTTGCCTCCATTTGTTATCAAATGTCCTATCGGGAAGGTGTCACATTAGGCTTGCTTATGAACACCAAGGGCCTTATTGAAATGATCATCCTCAATGTCGGCAAGGACCAAAAGGTGTTAGATGATCAAACATTCACAGTTATGGTGATTGTAGCCCTCGTTATGACCGGGATAATAACACCTGTAGTTACAATAATCTATAGGCCAACAAGAAGGTTTCTACCCTATAAGAAACGAACAATCCAAGTATCAAAGCCAGATTCAGAGTTCAGAGTTTTAGTTTGTATACACACACCTCGAAATGTGCCAACTATCATCCATCTCCTTGATGCCTCCCATCCAACCAAAAGATCCCCAATTTGCATTTATGTGCTACACTTGGTCGAACTCACAGGTCGAGCCTCAGCCATGCTCATTGTCCACAACACCAGAAAATCAGGTCGTCCTGCTTTAAATCGAACCCAAGCTCAATCAGATCACATCATCAATGCATTCGAGAACTACGAACAACACGTCGATTGCGTCTCTGTTCAACCCCTCACAGCCATTTCCCCTTACTCGACAATGCACGAAGACATATGCAATTTAGCCGAGGATAAACGGGTTGCCCTCATAATCATCCCATTCCATAAGCAACAAACAGTCGATGGAGGAATGGAAGCCACAAATCCAGCATTTAGATTGGTTAACCAAAATGTGTTAGCCAATGCCCCTTGCTCCGTCGGAATTCTAGTCGATCGAGGCTTAAACGGCTCGAACCGAGTCGCTTCAAACAAGGCAACTCATTATAACATAATCACGTTGTTCTTTGGTGGACAAGATGATAGAGAAGCCTTATCATACGCATGGAGAATGTCAGAACATCCAGGAGTGAGCTTAACCGTAATGCGATTCATCGCTGCACAAGAAATAATTGAACCAAAACCAGAAGAGGACGCACCAATCGTTTCAGCAATGGAAACAGAAATTAGCAGAGAGAGGAAACTCGATGAAGACTACATAAACGAATTTAGGACAAAGAACCCAAATAGCGAGTCAATTACTTACACAGAGAGAGTGTTGAACAACGGCGAGGAGACAGTGGCGGCCATAAGATCAATGGACGATGCTCACGACCTGTTCATCGTAGGAAGAGGTGAATCTCATGTATCACCTCTCACTGCCGGACTCACAGACTGGAGCGAATGTCCAGAGCTGGGAGCAATCGGTGATTTGTTAGCTTCATCGGATTTTGCAGCGACGACTTCGGTTTTGGTAGTGCAACAGTTCGGAGCAGCAATGGCGGTAGAACATGGAGAAGAAGAAGGTTCACCACGCAACGAAGAACCCATTGATCCCTACCAAAGCCTGAGATCAATGAATTTGAGGCAACATACTCCACCAAGAACTCAAATGATTTATGATACATGA 2511 43.73 MDAEPSITNGTDDTIVCYAPTMITTNGVWQGDNPLDYSLPLFILQLTMVVLMTRALVFLLKPFRQPRVISEILGGVILGPSVLGRSAKFANTVFPLRSVMVLETMANVGLLYFLFLVGVEMDLSVIRRTGKKAMAIAVAGMILPFGIGAAFSFQLHKADQKLNYNTYVMFLGIALSVTAFPVLARILAELKLINSELGRMAMAAALFNDMCAWVLLALAIALSENDSSSLASLWVVLSSVGFVLFCIFIVRPTISWMIRKTPEGESVSEFYICLILTGVMISGFVTDAIGTHSVFGAFVFGLVIPNGSLGVALIEKLEDFVSGLLLPLFFAISGLKTNVASIEGLISWVSILFITLLAFIGKIIGTLLASICYQMSYREGVTLGLLMNTKGLIEMIILNVGKDQKVLDDQTFTVMVIVALVMTGIITPVVTIIYRPTRRFLPYKKRTIQVSKPDSEFRVLVCIHTPRNVPTIIHLLDASHPTKRSPICIYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENYEQHVDCVSVQPLTAISPYSTMHEDICNLAEDKRVALIIIPFHKQQTVDGGMEATNPAFRLVNQNVLANAPCSVGILVDRGLNGSNRVASNKATHYNIITLFFGGQDDREALSYAWRMSEHPGVSLTVMRFIAAQEIIEPKPEEDAPIVSAMETEISRERKLDEDYINEFRTKNPNSESITYTERVLNNGEETVAAIRSMDDAHDLFIVGRGESHVSPLTAGLTDWSECPELGAIGDLLASSDFAATTSVLVVQQFGAAMAVEHGEEEGSPRNEEPIDPYQSLRSMNLRQHTPPRTQMIYDT 836
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 568126 571254 + ClCG02G000535.1 Cla02g00055 266181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00055 836 Pfam Sodium/hydrogen exchanger family 49 432 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Cla02g00055 836 Gene3D - 41 439 IPR038770 -
Cla02g00055 836 MobiDBLite consensus disorder prediction 817 836 - -
Cla02g00055 836 MobiDBLite consensus disorder prediction 796 836 - -
Cla02g00055 836 Gene3D - 478 758 - -
Cla02g00055 836 PANTHER CATION/H + ANTIPORTER 12 802 - -
Cla02g00055 836 PANTHER BNAA09G08340D PROTEIN 12 802 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00055 Cla-Chr2:568126 Cla04g00260 Cla-Chr4:8247773 0 dispersed
Cla03g00040 Cla-Chr3:401074 Cla02g00055 Cla-Chr2:568126 2.53E-154 dispersed
Cla05g00944 Cla-Chr5:9369541 Cla02g00055 Cla-Chr2:568126 1.66E-19 dispersed
Cla09g00367 Cla-Chr9:3602276 Cla02g00055 Cla-Chr2:568126 4.35E-104 dispersed
Cla09g01184 Cla-Chr9:14379357 Cla02g00055 Cla-Chr2:568126 1.67E-116 dispersed
Cla10g01460 Cla-Chr10:29825247 Cla02g00055 Cla-Chr2:568126 1.96E-171 dispersed
Cla02g00055 Cla-Chr2:568126 Cla07g00447 Cla-Chr7:6063378 5.21E-171 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00055 - - csv:101219265 1514.59