Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00059 ATGTCTCGTACTCATAGCACTTCTCGTTTCTCTTTCATTCTCAGAAGCTGTGCTCATCTTTATGCAATTGCCCAAGCAAAGCAAGCCCACGCTCAAATCCTCATCCATGGCTTCCTTCCGCATTTAACTCTTCTAACAGATCTTCTTTTGGTGTATTGCAAATGTGGGTTTCTTCATGACGCCCGCAAGGTGTTTGACAAAATGACTCACAGAAACATGCACTCCTGGAATATCTTGATTGCTTCTTATGTTCATAATTCTTTGTACTTTGATGCAATAAATGTGTTTAATGAGTTTACGGACCTTGGTTTTCTGCCTGACCACTATACTTTGCCTCAGATGCTTAAGGCTAGTGTTGGTATTGGGGATGTTTATTTGGGGAAGAGACTTCATTGTTGGACAATTAGGCTGGGATTTGAAGGTTACGTTGTTGTAGACAGTACGGTTTTAGACTTTTACGCTAAATATGGGATTGTGGGTGATGCTAAGAAGGTGTTTGATAATATGATCTTTAAAGATACAATTTCTTGGAACTCAATGATTTCTGGGTATGGGAGGGCTGGGCTTTATGAAGATGCATTGGATTGTTTCAAGCGCATGCTCTTGGAAGGAGTGAAAATGGATTTTATGACAATTCCTAGCGTTTTGAATGCTTGTGGAGGGGAAGGAGATTTGAGAAAAGGCAAAGAGATTCATTGCTTAGTTTTGAAGAGTATGGTATTTGCTGCTGATGTTGCAATTGGGAACTCATTGATTGATATGTATGCAAAGTGTGGAAGCCTGCTTGATTCTGAAAAGGTATTTTGGAATATGAGCAGCTTGAATATTGTTACATGGACCACAATGATATCTTGTTATGGGGCTCATGGGAAAGGAGAGAAATCCTTGGTCCTGTTTAACAAAATGAAGGATTGTGGAATCCAACCCAATTCTGTAACGCTGACGGCCATTTTGGCTAGTTGCAGTCATGCAGGTTACATCAATGAAGGTTGGAGAATTTTCCAGTCTATTGTTTCAGATTATGAGATTGAACTGACGATAGAACATTATGCTTGTGTTGTGGATCTTCTGAGTCGCCTCGGCTTTCTGCAGGAAGCGTTTCTGTTGATAAGAAATATGAAGCTCACCGCTGTTCCAAGCATTTGGGGTGCTCTGCTTTCTGGGTGTATGATCCACAGGAACCTTGAGATTGGAGAAATTGCAGCCAACCAGCTTTTCGAGTTGGAACCTACAAATCCAAGCAATTTTATAGCCTTGATTAGTATATATGAATCTCTTGGTATATCGCATGGTGCTTCGCTGATTAGAGAGAAGATGAGAGACCTTGGTTTGACGAAAATCCCTGGCTGCAGCTGCATAACCATTGATGGAGTTGTGCATAAATTCTACGGAGGGGACAATTCTCACCCTTTGGCTTTGAGGATATTTGAAACATTAAATGCAGTGAGACAAGCAACTGTAAACTGCGAAACAACTTAG 1479 40.84 MSRTHSTSRFSFILRSCAHLYAIAQAKQAHAQILIHGFLPHLTLLTDLLLVYCKCGFLHDARKVFDKMTHRNMHSWNILIASYVHNSLYFDAINVFNEFTDLGFLPDHYTLPQMLKASVGIGDVYLGKRLHCWTIRLGFEGYVVVDSTVLDFYAKYGIVGDAKKVFDNMIFKDTISWNSMISGYGRAGLYEDALDCFKRMLLEGVKMDFMTIPSVLNACGGEGDLRKGKEIHCLVLKSMVFAADVAIGNSLIDMYAKCGSLLDSEKVFWNMSSLNIVTWTTMISCYGAHGKGEKSLVLFNKMKDCGIQPNSVTLTAILASCSHAGYINEGWRIFQSIVSDYEIELTIEHYACVVDLLSRLGFLQEAFLLIRNMKLTAVPSIWGALLSGCMIHRNLEIGEIAANQLFELEPTNPSNFIALISIYESLGISHGASLIREKMRDLGLTKIPGCSCITIDGVVHKFYGGDNSHPLALRIFETLNAVRQATVNCETT 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 609747 611225 + ClCG02G000570.1 Cla02g00059 266185

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00059 492 Gene3D Tetratricopeptide repeat domain 2 123 IPR011990 GO:0005515
Cla02g00059 492 Gene3D Tetratricopeptide repeat domain 124 233 IPR011990 GO:0005515
Cla02g00059 492 Pfam E motif 392 453 IPR046848 -
Cla02g00059 492 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 275 309 IPR002885 -
Cla02g00059 492 PANTHER OS07G0578800 PROTEIN-RELATED 5 488 IPR045215 GO:0003723|GO:0009451
Cla02g00059 492 Pfam PPR repeat 48 72 IPR002885 -
Cla02g00059 492 Pfam PPR repeat 175 205 IPR002885 -
Cla02g00059 492 Pfam PPR repeat 75 104 IPR002885 -
Cla02g00059 492 Pfam PPR repeat family 275 321 IPR002885 -
Cla02g00059 492 TIGRFAM PPR: pentatricopeptide repeat domain 277 310 IPR002885 -
Cla02g00059 492 TIGRFAM PPR: pentatricopeptide repeat domain 175 208 IPR002885 -
Cla02g00059 492 TIGRFAM PPR: pentatricopeptide repeat domain 74 107 IPR002885 -
Cla02g00059 492 Gene3D Tetratricopeptide repeat domain 249 443 IPR011990 GO:0005515
Cla02g00059 492 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 173 207 IPR002885 -
Cla02g00059 492 PANTHER OS11G0213500 PROTEIN 5 488 - -
Cla02g00059 492 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 72 106 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00059 - - - csv:101220461 882.863
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00059 Cla-Chr2:609747 Cla01g01124 Cla-Chr1:18656818 1.41E-33 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1282 . . . . . . . . . Cmo20g01073 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma20g01065 . . . . Bhi10g01667 . . . Hepe08g1246 . . Cla02g00059 . . . . . . Lsi10g00721 . . Cme11g00063
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014206 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 0 1 1 1 1 0 1 1 1 23
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla02g00059 Cla_Chr02 FPKM 7.426194 8.401845 7.253089 7.655871 7.614791 7.156807 8.263841 6.446157 6.624877 6.294783