Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00061 ATGAAACTCAAACCCGCCATTATCTTTCTCTCTTCATTTCCAATGCCTTCCCTTCTCTTTCTCTTCTTCCTCCCTCTACATTTCTCTTACGCCGCCCACCAAACTCTCCGCCCTGAGATCGCTGCCGCCTGCACTGCCACTCGCTTCCCGGACCAATGCGCATCCTCCATCTCCCAATCCAACCGTCTTCCCCAGAATCCCACGCCGCTGCAGATTATTCAGGCCGCCGTCTGGCTCTCCTCGGAGAATCTCAAAACTGCCAAATCCATGGTGAAGGCCATTCTCGATTCCTCCAAGGAGAGCCCCAACCGCAACCGCACCGCCGCGGCGCTGAGCTGCCTGGAGGCGCTGGGTTACTCCGAGTACCGAATTTCGCTTTCCAACGACGCCATTCCGCTCGGTCGGACTAAAGACGCGCGCGCGTGGCTAAGCGCGTCGCTCCTCTACCAGACTGGTTGCCGGTCCGGTCTCGTGTACGTGAACGACACGCGCGAAGTGGATCAAATGATGTCGTTTCTTGACAATCTGACCGTACTGTCGAGCAACGCGCTGAGCATGGCGGTGGCGTACGATATTTTCGGGAATGAGACGGCGGCGTGGGGCCCACCGAGGACGGAGCGAGACGGGTTCTGGGAAGGGAGTAGTGGGACGGCGGTGGGGACGGGTATGAGGATTCCGGCAAAGACGGAGGCGAACGCGACGGTGTGTAAAGACGGGAGTGAGGGATGTTACACGACGGTGCAGGCGGCGGTGGAGGCGGCGCCGGGAAACTCGGCGGTGAGATTTGTGATACACATAAAGGAAGGGGTTTACGAGGAGAGTCTGAGAGTGGGATTGGAGAAGAAGAATTTGGTGTTTTTGGGAGATGGGATGGGCAAAACGGTCATTACGGGCTCTTTGAATGTGGGCCAGCCTGGGATCTCAACCTACAATTCGGCTACTGTCGGAGTTCTTGGGGATGGATTCATGGCGAGTGGACTCACCATTCAAAACACAGCAGGCCCTAATGCCCACCAAGCTGTGGCCTTTAGATCAGACAGTGATCTCTCAATCATACATAATTGTGAGTTTATAGGCAATCAAGACACTCTCTACGCCCATTCCCTCCGCCAATTCTACAACTCCTGTCGAATCCTAGGCAATGTTGACTTCATCTTTGGCAACTCAGCCTCCATCTTCCTAAACTGTCATATCTTAGTCCGTCCTCGCCAGCTCAACCCTCGGCTCGGAGACGACAACCCCATAACTGCACACGGGAGGACCGACCCTGCGCAGTCGACTGGGTTCGTGTTCCAAAACTGCCTTGTCAACGGCACTGAGGAGTTCATGTCGTTGTACTATGCCAATCCTAAGGTGCATAGGACCTTCTTGGGGCGACCGTGGAAGGAGTATTCGAGGACGATTTTTATACATTGTGATCTTGAAGCTCTTGTTTCGTCGTCTGGGTGGATGCCATGGAGTGGGGATTTTGGTTTGAAGACATTATATTATGGGGAGTTTGAGAATTTTGGAATTGGATCGAATTCCTCGGAGCGAGTTCGATGGAGTAACCAGATCCCTGCTGAGTATGTTTTTAGTTACTCTGTTCAGAATTTCATCCAAGGAAATGAATGGATTCCTTCATCTTAG 1629 53.41 MKLKPAIIFLSSFPMPSLLFLFFLPLHFSYAAHQTLRPEIAAACTATRFPDQCASSISQSNRLPQNPTPLQIIQAAVWLSSENLKTAKSMVKAILDSSKESPNRNRTAAALSCLEALGYSEYRISLSNDAIPLGRTKDARAWLSASLLYQTGCRSGLVYVNDTREVDQMMSFLDNLTVLSSNALSMAVAYDIFGNETAAWGPPRTERDGFWEGSSGTAVGTGMRIPAKTEANATVCKDGSEGCYTTVQAAVEAAPGNSAVRFVIHIKEGVYEESLRVGLEKKNLVFLGDGMGKTVITGSLNVGQPGISTYNSATVGVLGDGFMASGLTIQNTAGPNAHQAVAFRSDSDLSIIHNCEFIGNQDTLYAHSLRQFYNSCRILGNVDFIFGNSASIFLNCHILVRPRQLNPRLGDDNPITAHGRTDPAQSTGFVFQNCLVNGTEEFMSLYYANPKVHRTFLGRPWKEYSRTIFIHCDLEALVSSSGWMPWSGDFGLKTLYYGEFENFGIGSNSSERVRWSNQIPAEYVFSYSVQNFIQGNEWIPSS 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 620728 623942 + ClCG02G000590.2 Cla02g00061 266187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00061 542 TIGRFAM PME_inhib: pectinesterase inhibitor domain 18 185 IPR006501 GO:0004857
Cla02g00061 542 Pfam Pectinesterase 232 536 IPR000070 GO:0030599|GO:0042545
Cla02g00061 542 SUPERFAMILY Pectin lyase-like 230 541 IPR011050 -
Cla02g00061 542 SMART PMEI_2 35 186 IPR006501 GO:0004857
Cla02g00061 542 PANTHER PECTINESTERASE 22 540 - -
Cla02g00061 542 Pfam Plant invertase/pectin methylesterase inhibitor 40 186 IPR006501 GO:0004857
Cla02g00061 542 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 39 186 IPR035513 -
Cla02g00061 542 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 22 540 - -
Cla02g00061 542 CDD PMEI-like_3 42 186 - -
Cla02g00061 542 Gene3D Invertase/pectin methylesterase inhibitor family protein 37 189 IPR035513 -
Cla02g00061 542 Gene3D - 226 542 IPR012334 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00061 Cla-Chr2:620728 Cla05g00797 Cla-Chr5:7768370 6.05E-97 dispersed
Cla02g00061 Cla-Chr2:620728 Cla02g00063 Cla-Chr2:625842 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00061 - - bhj:120087741 983.015