Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00063 ATGCTCCCCAGAAAACCCCCATTCCCTTTCCCCATTTCCAAATCCACTCTCCTTTTCCTCTCCATGGCTTCCCTCTCCTTCCTCTCTTTCCTCTCCCTCTTCTTCTTCTTCCTCTCTCTCTCCTCCTCCTCCGCCGCCGCTCGCCATCGCCACCACCACCTCCCAACCCATTTCACCAACCCCCCTTCCACCGACGACGTCATCCTTCACGCCTGCAAGGCCACCCGTTTTCCCGATCAATGCGGATCTTCCCTCTCTCACTCCTCCTCTCTCCCTCCCAATCCTACCCCTCTCCAGATCCTCCAATCCGCCGTCGCCCTCTCATCCGACGGTTTAGCCACTGCTCAATCCATGGTTAACCAGATTCTCGATTCCTCCGCCAAGAATCTCAATCGGACCACCGCTGCCAAGAACTGCCTTGAGGTACTGCGGAATTCCGATTACCGTATTTCTCTCACCAACGACGCTCTCCGCCGTGGTCGGACCAAGGACGCCCGCGCCTGGCTGAGTGCGTCCCTACTTTACCATTACGATTGCTGGTCTGCGCTCAAGTACGCCAACGACACTCAATTGGTTGACAAAACCATGGCGTTTCTCGATTCTCTTATTGGTCTCTCCAGCAACGCGCTGAGTATGTTGGTGGCTTACGACATTTCCGGCAACGATACGGCGGCGTGGACGCCGCCGAGGACTGAGCGGGATGGGTTTTGGGAAGGCGGTGGTGGCGGATCTGGGTTGGGGTTTAGCGGTGGGTTTCCGTCGAAGGTGGCGGCTGATGCGACGGTGTGCAAGGATGGCGCTGGGGGATGTTATAAAACTGTTCAGGAAGCTGTTAACGCGGCGCCGGAGAATGCGGCGGCGCGTAGGTTTGTGATTCATATTAAGGAAGGTGTTTATGAGGAAATCGTGAGGGTTCCGTTAGAGAAGAAGAATGTGGTGTTTTTAGGAGATGGGATGGGCAAAACGGTCATTACGGGCTCACTTAATGTGGGCCAGCCTGGGATTTCCACTTACAACACCGCCACCGTTGAAGAGGTATGGATGACCCGAATTCTTTCTGTTCGATGTGATGGAAGTGGAGTACTTGGTGATGGATTCATGGCTAGCGGTCTCACCATTCAAAACACAGCAGGGCCAGATGCTCATCAAGCTGTGGCTTTTAGATCAGACAGTGATCTCTCAGTTATTCAAGACTGTGAGTTTCTAGGCAATCAAGACACTCTCTATGCTCACTCCCTTCGCCAATTCTACAAATCTTGTAAGATTCAAGGCAATGTAGATTTCATCTTTGGAAACTCAGCTTCCATCTTCCAAGACTGCGAGATCCTAGTTCGCCCCAGACAGCTCAAGCCTGAGAAAGGTGAAAACAACGCCATCACTGCTCAGGGCAGGACCGACCCTGCTCAAGCGACAGGGTTCGTATTCCAAAACTGCCTCATAAATGGCACTCAGGAGTACATGTCATTGTACTACAGCAAGCCTAAAGTGCATAAAAACTACTTGGGGAGACCGTGGAAGGAGTACTCGAGGACAGTTTTTATACATTGTACTCTCGAGGCTCTTGTCACGCCTGCGGGGTGGATGCCATGGAGTGGGGATTTTGCATTGAAGACTCTTTTCTATGGAGAGTTTGAGAATTCGGGAGCGGGGTCGAAGACATCGGAGAGAGTCGGGTGGAGTAGTCAGATTCCAGCACAACATGTTTTTAGTTACTCTGTTCAAAATTTCATTCAGGGAGACGAATGGATTCCTTCATCTCAGTCATCTAATGAACCAAAAATGTTGAACAAGAAAAGTAAAGATGTGAAATTAGATTAG 1818 51.21 MLPRKPPFPFPISKSTLLFLSMASLSFLSFLSLFFFFLSLSSSSAAARHRHHHLPTHFTNPPSTDDVILHACKATRFPDQCGSSLSHSSSLPPNPTPLQILQSAVALSSDGLATAQSMVNQILDSSAKNLNRTTAAKNCLEVLRNSDYRISLTNDALRRGRTKDARAWLSASLLYHYDCWSALKYANDTQLVDKTMAFLDSLIGLSSNALSMLVAYDISGNDTAAWTPPRTERDGFWEGGGGGSGLGFSGGFPSKVAADATVCKDGAGGCYKTVQEAVNAAPENAAARRFVIHIKEGVYEEIVRVPLEKKNVVFLGDGMGKTVITGSLNVGQPGISTYNTATVEEVWMTRILSVRCDGSGVLGDGFMASGLTIQNTAGPDAHQAVAFRSDSDLSVIQDCEFLGNQDTLYAHSLRQFYKSCKIQGNVDFIFGNSASIFQDCEILVRPRQLKPEKGENNAITAQGRTDPAQATGFVFQNCLINGTQEYMSLYYSKPKVHKNYLGRPWKEYSRTVFIHCTLEALVTPAGWMPWSGDFALKTLFYGEFENSGAGSKTSERVGWSSQIPAQHVFSYSVQNFIQGDEWIPSSQSSNEPKMLNKKSKDVKLD 605
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 625842 628920 + ClCG02G000597.1 Cla02g00063 266189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00063 605 MobiDBLite consensus disorder prediction 583 605 - -
Cla02g00063 605 SUPERFAMILY Pectin lyase-like 256 585 IPR011050 -
Cla02g00063 605 PANTHER PECTINESTERASE 18 586 - -
Cla02g00063 605 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 66 212 IPR035513 -
Cla02g00063 605 Pfam Pectinesterase 259 580 IPR000070 GO:0030599|GO:0042545
Cla02g00063 605 Gene3D Invertase/pectin methylesterase inhibitor family protein 64 215 IPR035513 -
Cla02g00063 605 SMART PMEI_2 63 212 IPR006501 GO:0004857
Cla02g00063 605 CDD PMEI-like_3 71 212 - -
Cla02g00063 605 Pfam Plant invertase/pectin methylesterase inhibitor 68 212 IPR006501 GO:0004857
Cla02g00063 605 Gene3D - 256 595 IPR012334 -
Cla02g00063 605 TIGRFAM PME_inhib: pectinesterase inhibitor domain 31 212 IPR006501 GO:0004857
Cla02g00063 605 PANTHER PECTINESTERASE 18 586 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00063 Cla-Chr2:625842 Cla01g02159 Cla-Chr1:35741531 1.08E-101 dispersed
Cla02g00061 Cla-Chr2:620728 Cla02g00063 Cla-Chr2:625842 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00063 - - csv:101221165 986.482