Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00066 ATGGGAATTGGGAATTTGGAGCGTACCTTTGACTCTCTATCTTTAAACCTTTCTTCCTCTGCTTTCATCAATCTTTTTCTTCTTCTTCTTCCCATTAACAATTTACAGTTCATCGCCATGGTCAGGCCGCACAATCTCTTCATCACTGTTCCCACTCACTTCTGTTGCCCAATATCTCTCGACCTCATGCAATCTCCCGTCAGTTTGACCACCGGTGTCACCTACGACCGCTCCAGCATCCAGCGCTGGCTCGACTCCGGCCATAATACTTGCCCCGCCACCATGCAGATCCTCCACAACTACGACTTCGTTCCCAATTCTAATCTCAAGCGACTCATTCAGATTTGGTCCGATTCCCTCCAATTCCCCCTCTCTACACTCTCCCAATCGGATCATATTCTTACCGCTGTCGATGATTTGCGCACAAACGGAAATGGCTCTGTTTCAGTTTCTGTTTCTGTCTCTGCTTCTCTATCCAAGCTACTCTGTTTCGGTGCACGATTGGAGCAGAACGTCAAGTTTCTCGGGAGGATTCACGGCTTTGTACCGGTGCTTCTCGATGTTCTTCGTTGTAGAGATGTTGATTGTTCGGAACTGGTGGTTAGGGTTTTGGATTTGGTGAGATGCGAAATTGAGGATCGGGAGGAGTTTATGAACATGATGTTGAAAAGCGATCGCGATTGTTTGAGATCTCTGGTTCTCGTTCTACAGCGAGGAAGTTCGGAATCGCGAATTGGAACAGCGAGGCTTCTCGAGTGCGTCGCCATTAACGCTGAATCAAAGAACTTAATTGCCGAAAACGAAGCTATTCTACACGAATTGATTGGAGTAATCGGAATAGACGAAGATCCGAAACTAATAGAATCGGTGCTCTCGTGCTTAATCGCAATATCAATGCCGAAACGAGTGAAAATCAAACTCGTTCGATTAGGAGTAATAAAAGCCCTAACCAGACTGCTGAAGCACCGGAACGCAAGCGTGGGAGTAACGGAGAAGGTTCTGAGGCTATTAGCGGCGGCGGCGGCGGTAGAGGAAGGGCGGTCGGAGATGTTGGAGAACGGAGGAGAATGCGTGGGGGGCATGGTGAAGAAAGTGATGAAGGTGTCGAGTGCGGCGACGGAGCAGGCGGTGACGGCGCTGTGGTGCATATGCTATTTGTTCCGGGAAGAGAGGGCGGCGGAGGCGGTGGCGGAGGCGAAAGGGGTTGAGAAGATACTGTTGTTGATGCAGAGCCATTGTCCGGCGACGGTCAGGCAAATGGCCAAAGATCTTCTAAAGATTTTGAAGGTTAATTCCATCTCCTCTTGCTTATCAATTTATGATACTAACAATTCTTACATTATGCCCTTTTGA 1353 48.48 MGIGNLERTFDSLSLNLSSSAFINLFLLLLPINNLQFIAMVRPHNLFITVPTHFCCPISLDLMQSPVSLTTGVTYDRSSIQRWLDSGHNTCPATMQILHNYDFVPNSNLKRLIQIWSDSLQFPLSTLSQSDHILTAVDDLRTNGNGSVSVSVSVSASLSKLLCFGARLEQNVKFLGRIHGFVPVLLDVLRCRDVDCSELVVRVLDLVRCEIEDREEFMNMMLKSDRDCLRSLVLVLQRGSSESRIGTARLLECVAINAESKNLIAENEAILHELIGVIGIDEDPKLIESVLSCLIAISMPKRVKIKLVRLGVIKALTRLLKHRNASVGVTEKVLRLLAAAAAVEEGRSEMLENGGECVGGMVKKVMKVSSAATEQAVTALWCICYLFREERAAEAVAEAKGVEKILLLMQSHCPATVRQMAKDLLKILKVNSISSCLSIYDTNNSYIMPF 450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 659105 660809 + ClCG02G000630.2 Cla02g00066 266192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00066 450 Gene3D - 124 440 IPR011989 -
Cla02g00066 450 SMART Ubox_2 53 116 IPR003613 GO:0004842|GO:0016567
Cla02g00066 450 SUPERFAMILY ARM repeat 166 439 IPR016024 -
Cla02g00066 450 PANTHER WDSAM1 PROTEIN 44 450 IPR045185 GO:0061630
Cla02g00066 450 ProSiteProfiles U-box domain profile. 49 123 IPR003613 GO:0004842|GO:0016567
Cla02g00066 450 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 27-RELATED 44 450 - -
Cla02g00066 450 SUPERFAMILY RING/U-box 47 118 - -
Cla02g00066 450 Pfam U-box domain 50 117 IPR003613 GO:0004842|GO:0016567
Cla02g00066 450 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 311 355 IPR000225 GO:0005515
Cla02g00066 450 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 49 122 IPR013083 -
Cla02g00066 450 CDD RING-Ubox_PUB 54 96 IPR045210 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla01g01528 Cla02g00066 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00066 Cla-Chr2:659105 Cla02g02177 Cla-Chr2:36861764 1.62E-34 dispersed
Cla01g01528 Cla-Chr1:29819686 Cla02g00066 Cla-Chr2:659105 2.74E-131 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00066 - - csv:101221867 618.616