Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00070 ATGCCTCCGCCGAAGAAGGGAAAAACGAAAGCGCCGAAAGCTACTGAATCAATTCAATCCTCCGTCAAAACCAACAATTACCCATCTTGTCTTCGCTCTGTTTCTCCTTCTTCCGTCGCCATTACCATCCACGCAAAGCCTGGCTCCAAGATCGCTTCTATAACAGACTTTGGCGATGATGCGTTAGGAGTGCAAATCGATGCACCGGCCAAAGATGGAGAAGCTAATGCTGCACTTCTTGATTACATTAGCTCTGTTTTAGGTGTCAAAAGAAGACAAGTGTCTATTGGTTCTGGCTCTAAATCAAGAGGCAAGGTTGTGATCGTGGAGGAGATCCTCAGAGGTAATAACTCCAAATCTTCTAGCATGAAAAGGAGAGTATGCTTCAGGATTCTTGAGGAATTACGTATGTAG 414 44.93 MPPPKKGKTKAPKATESIQSSVKTNNYPSCLRSVSPSSVAITIHAKPGSKIASITDFGDDALGVQIDAPAKDGEANAALLDYISSVLGVKRRQVSIGSGSKSRGKVVIVEEILRGNNSKSSSMKRRVCFRILEELRM 137
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 684987 688625 - ClCG02G000660.2 Cla02g00070 266196

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00070 137 Gene3D - 29 126 IPR036591 -
Cla02g00070 137 SUPERFAMILY YggU-like 29 112 IPR036591 -
Cla02g00070 137 SMART DUF167_2 35 111 IPR003746 -
Cla02g00070 137 Hamap UPF0235 protein YggU [yggU]. 35 123 IPR003746 -
Cla02g00070 137 PANTHER OS04G0686300 PROTEIN 1 112 - -
Cla02g00070 137 MobiDBLite consensus disorder prediction 13 29 - -
Cla02g00070 137 MobiDBLite consensus disorder prediction 1 29 - -
Cla02g00070 137 Pfam Uncharacterised ACR, YggU family COG1872 39 110 IPR003746 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00070 K09131 K09131; uncharacterized protein - csv:101218498 204.142
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00070 Cla-Chr2:684987 Cla03g00351 Cla-Chr3:4081708 4.87E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1255 . . . . . . . . . Cmo20g01078 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma20g01071 . . . . Bhi10g02336 . . . Hepe08g1255 . . Cla02g00070 Cam02g0071 Cec02g0072 Cco02g0065 Clacu02g0069 Cmu02g0068 Cre02g0408 Lsi10g00711 . . Cme11g00074
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012106 0 3 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla02g00070 Cla_Chr02 FPKM 1.677937 1.944708 2.668767 2.581563 3.557271 4.428667 3.521503 2.16382 2.135441 2.347553