Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00072 ATGGCTGATGCTGAGGATATCCAGCCACTTGTTTGTGACAATGGAACTGGAATGGTGAAGGCTGGATTTGCCGGTGATGATGCTCCCAGAGCAGTGTTTCCCAGTATTGTTGGTCGACCTCGACACACTGGTGTCATGGTGGGTATGGGCCAGAAAGATGCTTACGTTGGTGACGAGGCCCAATCCAAAAGAGGTATTCTTACCTTGAAATATCCCATTGAGCATGGTATTGTCAGCAACTGGGATGATATGGAAAAGATTTGGCATCACACATTCTACAATGAGCTTCGTGTTGCACCTGAAGAACACCCAGTGCTTCTTACCGAAGCTCCTCTCAATCCTAAAGCCAACAGAGAAAAGATGACACAAATCATGTTTGAAACTTTCAATGTACCTGCCATGTATGTTGCCATCCAGGCCGTTCTATCTCTGTATGCCAGTGGTCGTACAACAGGTATTGTGCTCGACTCTGGTGATGGTGTTAGTCACACTGTGCCAATCTATGAGGGTTATGCTCTACCCCATGCTATCCTCCGTCTGGACCTTGCTGGTCGTGATCTAACTGATGCTTTGATGAAGATTCTCACTGAGAGAGGGTACATGTTCACAACCACTGCCGAACGGGAAATTGTCCGTGACATGAAAGAGAAGCTTGCTTATGTTGCACTCGACTATGAGCAGGAACTGGAGACTGCTAAGAGTAGCTCCTCAATTGAGAAGAACTATGAACTGCCCGATGGACAAGTCATCACAATTGGAGCTGAGAGATTCCGTTGCCCCGAAGTTCTTTTCCAGCCATCCCTCATTGGAATGGAAGCTGCTGGAATCCACGAGACTACCTACAACTCAATTATGAAGTGTGATGTGGATATCAGAAAAGATTTGTATGGAAACATTGTTCTCAGTGGTGGTTCTACCATGTTCCCTGGTATCGCTGACCGTATGAGCAAAGAGATCACAGCTCTTGCTCCCAGCAGCATGAAAATCAAGGTCGTTGCACCACCAGAAAGGAAATACAGTGTCTGGATTGGAGGATCAATCCTTGCATCGCTCAGCACCTTCCAGCAGATGTGGATTTCAAAGGGCGAGTACGACGAATCTGGCCCATCCATTGTCCACAGGAAGTGCTTCTAA 1134 47.0 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSIEKNYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 377
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
2 718261 720944 + ClCG02G000680.1 Cla02g00072 266198
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00072 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Cla02g00072 377 SUPERFAMILY Actin-like ATPase domain 148 377 IPR043129 -
Cla02g00072 377 Gene3D - 10 371 - -
Cla02g00072 377 PRINTS Actin signature 28 37 IPR004000 -
Cla02g00072 377 PRINTS Actin signature 51 62 IPR004000 -
Cla02g00072 377 PRINTS Actin signature 63 85 IPR004000 -
Cla02g00072 377 PRINTS Actin signature 117 130 IPR004000 -
Cla02g00072 377 PRINTS Actin signature 142 161 IPR004000 -
Cla02g00072 377 PRINTS Actin signature 238 254 IPR004000 -
Cla02g00072 377 Gene3D - 140 340 - -
Cla02g00072 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Cla02g00072 377 PANTHER ACTIN 1 376 IPR004000 -
Cla02g00072 377 SMART actin_3 7 377 IPR004000 -
Cla02g00072 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Cla02g00072 377 PANTHER ACTIN 1 376 - -
Cla02g00072 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Cla02g00072 377 Pfam Actin 5 377 IPR004000 -
Cla02g00072 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Cla02g00072 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Cla01g01535 Cla02g00072 CCT
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00072 Cla-Chr2:718261 Cla10g01670 Cla-Chr10:32418651 0 dispersed
Cla05g02622 Cla-Chr5:37418935 Cla02g00072 Cla-Chr2:718261 7.22E-69 transposed
Cla06g01479 Cla-Chr6:28340784 Cla02g00072 Cla-Chr2:718261 1.67E-45 transposed
Cla09g01310 Cla-Chr9:20336805 Cla02g00072 Cla-Chr2:718261 0 transposed
Cla10g00427 Cla-Chr10:5724757 Cla02g00072 Cla-Chr2:718261 1.51E-39 transposed
Cla11g00293 Cla-Chr11:3359753 Cla02g00072 Cla-Chr2:718261 2.40E-17 transposed
Cla11g00898 Cla-Chr11:15304055 Cla02g00072 Cla-Chr2:718261 3.16E-26 transposed
Cla01g01535 Cla-Chr1:29929329 Cla02g00072 Cla-Chr2:718261 0 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00072 K10355 - csv:101215469 758.059