Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00074 ATGCTGGAAATTTCGCCTTCGCCGGAAAACTCTACCGCCGTCGCCGCTGCCGTCGTGAACCGGGCCGCCGAGGAAGACGGTGCAGCAGCCTCTGCCGGATTTTCGGAGGACGCTGACCGGAACTGGCCCGGTAATCGGTGGCCGCGAGAGGAGACTATGGCTTTGCTGAAGGTTCGGTCGAGTATGGATACTGCGTTTAGGGATGCAAGTTTGAAAGCTCCTCTATGGGAAGAAGTTTCCAGGAAATTGGCTGAGCTTGGGTATAATCGAAATGCGAAAAAATGCAAAGAGAAGTTTGAGAACATTTATAAGTATCACAAAAGGACTAAAGATGGAAGATCAGGGAAAGCGAATGGGAAAAATTATAGGTATTTTGAGCAATTAGAAGCTCTAGATAATAATCCATTGCTTCCCTCTCAAGCTGATTCAATGGAAGAAATCCCAAGGATTATCCCAAACAATGTTGTGCACAATGCAATTCCATGTTCCGTAGTAAACCCGAGTGCAAATTTTGTTGAAACTACCACCACTTCAATATCGACGTCGACCACATCTTGTTCGAGTAAAGAATCGGGTGGGACGAGGAAGAAGAAGAGGAAGTTTGTGGAGTTCTTTGAGAGGTTAATGAACGAGGTGATTGAGAAGCAGGAGAAATTGCAAAAGAAGTTTGTGGAGGCATTGGAGAAATGTGAAGTAGAGAGGTTAGCTAGAGAAGAAGAATGGAAGATGCAAGAATTAGCTCGAATCAAGAAAGAGCGAGAACGTTTAAATCAAGAGAGATCGATTGCAGCTGCAAAGGATGCAGCTGTTCTTTCATTCTTGAAGGTTTTCTCTGAACAAGTGGGCACAGTGCAGTTCCCGGAGAACTTGATTTCAGTGGAGAATTTGACTGAGAAGCAAGATGATGGTAATGTTGACAGAAACACAAGCACTCAAGAGAATATCAACAATGGTAATTCGAATCAGATTAGCTCGTCCCGATGGCCGAAAGAAGAGATTGATGCTCTGATTCAGCTAAGGACTAATCTGCAGATGAAGTACCAAGATAATGGCCCTAAAGGTCCTCTCTGGGAGGAAATATCATTAGCCATGAAGAAACTTGGGTATGATAGAAGTGCAAAGAGGTGTAAAGAGAAATGGGAAAACATCAACAAATACTTCAAAAGAGTAAAGGAAAGCAACAAAAAGCGACCTGAGGATTCAAAGACATGTCCTTATTTCCAGCAGCTTGATGCATTGTACAAACAGAAATCCAAGAAAATTGTCAACAATCCAGCTAATCCAAATTACGAACTAAAACCCGAGGAACTATTGATGCACATGATGGGCGGCCAAGAAGAAAGCCACCAACCTGAATCAGCAACAGACGACGGTGAAGCTGAGAATGCCGATCAGAACCAAGAAGACGAAGATGAAGACGAAGATTATCAGATTGTGGCCAACAACAACCGTAATCAAATGGAAGTTAACTAG 1473 43.52 MLEISPSPENSTAVAAAVVNRAAEEDGAAASAGFSEDADRNWPGNRWPREETMALLKVRSSMDTAFRDASLKAPLWEEVSRKLAELGYNRNAKKCKEKFENIYKYHKRTKDGRSGKANGKNYRYFEQLEALDNNPLLPSQADSMEEIPRIIPNNVVHNAIPCSVVNPSANFVETTTTSISTSTTSCSSKESGGTRKKKRKFVEFFERLMNEVIEKQEKLQKKFVEALEKCEVERLAREEEWKMQELARIKKERERLNQERSIAAAKDAAVLSFLKVFSEQVGTVQFPENLISVENLTEKQDDGNVDRNTSTQENINNGNSNQISSSRWPKEEIDALIQLRTNLQMKYQDNGPKGPLWEEISLAMKKLGYDRSAKRCKEKWENINKYFKRVKESNKKRPEDSKTCPYFQQLDALYKQKSKKIVNNPANPNYELKPEELLMHMMGGQEESHQPESATDDGEAENADQNQEDEDEDEDYQIVANNNRNQMEVN 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 739567 741793 + ClCG02G000700.1 Cla02g00074 266200

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00074 490 MobiDBLite consensus disorder prediction 442 490 - -
Cla02g00074 490 ProSiteProfiles Myb-like domain profile. 45 103 IPR001005 -
Cla02g00074 490 MobiDBLite consensus disorder prediction 298 327 - -
Cla02g00074 490 PANTHER TRIHELIX TRANSCRIPTION FACTOR GT-2-LIKE 1 486 - -
Cla02g00074 490 CDD GT1 45 110 - -
Cla02g00074 490 Pfam Myb/SANT-like DNA-binding domain 326 413 IPR044822 -
Cla02g00074 490 Pfam Myb/SANT-like DNA-binding domain 45 131 IPR044822 -
Cla02g00074 490 Coils Coil 202 229 - -
Cla02g00074 490 MobiDBLite consensus disorder prediction 457 476 - -
Cla02g00074 490 PANTHER - 1 486 - -
Cla02g00074 490 ProSiteProfiles Myb-like domain profile. 320 384 IPR001005 -
Cla02g00074 490 Coils Coil 239 266 - -
Cla02g00074 490 Gene3D - 328 389 - -
Cla02g00074 490 Gene3D - 47 108 - -
Cla02g00074 490 MobiDBLite consensus disorder prediction 307 327 - -
Cla02g00074 490 SMART sant 43 105 IPR001005 -
Cla02g00074 490 SMART sant 324 386 IPR001005 -
Cla02g00074 490 CDD GT1 326 391 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00074 - - - cmo:103499654 849.736
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01063 Cla-Chr1:16710990 Cla02g00074 Cla-Chr2:739567 1.65E-20 dispersed
Cla02g00074 Cla-Chr2:739567 Cla08g00363 Cla-Chr8:9412698 2.08E-21 dispersed
Cla02g00074 Cla-Chr2:739567 Cla08g01699 Cla-Chr8:29590562 1.49E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1234 Blo04g00970 . . . Bpe15g00395 . . . Cmo02g00617 Cmo20g01084 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma03g01036 . Sed01g3751 . . . Cma20g01075 . . Cpe05g01074 . Bhi10g02341 Tan07g0890 Cmetu09g0584 . Hepe08g1260 . . Cla02g00074 Cam02g0075 Cec02g0077 Cco02g0069 Clacu02g0073 Cmu02g0072 Cre02g0412 Lsi10g00706 . . Cme11g00078
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008720 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 2 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60559 PF13837 Myb_DNA-bind_4 3.80E-22 CL0123 Cla TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla02g00074 Cla_Chr02 FPKM 0.0 0.0 9.352175 11.13469 0.627589 0.0 0.429916 1.329784 0.0 0.0