Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00078 ATGAGGTTATTATGCTCACTTTCCTCTCTCTGTTCTTCATCTTCTTCTTCCTCCTCCTCTGTTTCTTTTCCAACACGCGCTCTCCTTCTTCACTTTTCTCAATTGTCAACTTCTTTGAGGCGCCCCGACGAAGAGTCTCGAAATGTGAGAGTTTCAGTGTGGTGGGACTTCGAGAATTGCAACATTCCTGCGGATATCAACGTCTTTAAGGTCTCCCATTTAATCACTGCCGCTGTAAGGGCCAATGGCATCAAAGGTCCTGTTCAGATTACTGCTTTTGGTGACGTTTTACAGCTCTCGAGGGCGAACCAGGAGGCTCTCTCTTCTATTGGAATTAGCCTGACCCACATTCCTCGGGGTGGTAAAAACAGTGCTGATAGGTCTCTTCTTGTAGATCTTATGTACTGGGTTTCTCAAAACCCTCCACCAGCACATATTTTTCTAATTTCTGGTGACAGGGACTTTGCCAGCATTTTGCACCGTTTAAGAATGAATAATTACAATGTGTTGCTAGCAAGCCCTGAAACTGCTCCTGGTGTCTTATGCAGTGCTGCAAGCATCATGTGGCATTGGCATGCTTTGATTAAAGGGGAAAATCTAGCCGGAAGGCATTTTAATCACCCACCAGATGCCCCGTACGGTTCTTGGTATGGCCATTATAAGGCTCCCCTTGAAGACCCATTTCCAATTAATGAGCAACCATCTTCTTTACGAGCTGATGAGGTTTCTGAGCTCAGTTCAGATCCTAAGCCACGTTCCATTCCAAAGACAGTCGTTAGGCAAATACATAACATTTTGCAATTGTATCCCGAAGGACTCCGCATTACAGAACTCCGCTCAGTGTTGGGAAAGAGTTGTATACCTATGGATAGGGACTTTTATGGTTACAAAAAGTTTTCTCGCTTTCTTTTGTCAATGCCACACATTTTAGAGCTTCAACGAGATGATGATGGCCAACATCTTGTCCGTAGTGTCACTCCAAGGTGTCCCAATGGACCATTAGAGTCCAGTAGAGGTACATCTGGTAATGGCACTGAAGAGCAGGCCCCTAATCTGATAGTAAAGTTAAATAATAATGGTTCCTCAAGGGAATCGACGTGTGTAGTAGTCCTTCCATCCAATGCCCAAGACACACAATTGAAGGTGAAACCATCTTCCAAATTTGGTAAGCCTATTGATGAAGCTATGGAAGGGGAAGCATCAGGATGCCCGGTTTCTGAGCCACATGTTATAGAAGATTCAAAGCAGACCAGTAAACTTGAACCTGACAGTAATATTACTCCTTCAGATGAACAGCATTTGAAGGCCAATACGGGTTTTTTGAGTAGAATATGGAGAAGGATTTTAGGAAATAATGACACAAATTCTGAAAATGGAAGTCATTGTATTTCTGCAAAATGCTCTACGTCAGATGATACTTCAAAGCTGAAAAGTTCTAGTGGCCTTGTGGCAACTTATTCTAGTGACAGCCTTGGGGAGGCAAAAACTGAAGGAAGAACTGCTAAGCCAATGAGTGAAGATGCTAATTCAGTGCATCAAGTTTCAAATTCACCTGATCGTGAGTCTGCTAAGCTTCAGAAAGCGGGCATAGTTACTAGTGCATATGATGGTAAATCTAGTTCTAATCTAGGACTATTTGGCAGCATCAGAAATTGGTTCAAGTTTTGGGGAAAGAAAACTGAGAACGGTCAAGTCAGCAAGCATTGTTGTGAACAAAACCAGTTAAAGAATCAATCTGGGAAACATCATCTTTTTTCCAGCAATTTCTTTTGGCAAGAGATGCAATCCTTTATGGAAACACCTAAAGGAGTTGAGATTATTTCCCAGTCAAAAACCAGGTCAGAGATAGCTCAAAATCTGCTAGAGGGAGGACCTCCGGTTCTTAAATCGTTAAGCACTAGCGATCTCTTCGACTTCTTGGAATTGTTAATATCAGATAAGAAATGGGTGGAGGAATTCCCCTCTGAAACAAATCCTTTTAAGCTCACTCTCTCTATTGCTAGGAAAAGCTCTTGCACGGAATCGTTGCATCGTGCAAATGGGTTGGCATCAATCTTAATTAACAAAAAGTCACAAGGCAGCTTCCAGGGATCTGGAGAACATGATTCAGATTCAGATAGGAAAAATGAAAATATTCCTCAAACTACAACTATGACTAAAAACAAGTTTCCAGACAGGACGAGATGTGAGATATTAAGCGACTGTCAAAAGCTTGTGGATGAGATCTTGAGGGATCATCCAGAAGGATATAATATGGGGTCCTTCAGCGGACTGTTTCTTGAGAAGTATGGGTATAATCTTGATCTGCAGAAGCTTGGTTACCCTAACTTGGCATCCTTGCTACAGATAATACCTGGAGTGACAATAGTATCCAACCATATATTTCCCACCAGTAAGGCCCCAAAAGTTTCAAAGCTGGAAACAGCTCTTGTCAGTGATCCTGAGAAAATCACGTCTGATTCTGTAGCGAACTCTGATAATGAGTCATATGACCTGCCTAGAAAGGAAGATGATTTTGAGTCCGCATGGGAAGAATTAGGTCCAGCCTGCACAGATTGCAGCAATGTGAACAAAGAGGAATCAGCATTGAGTAGTGAAACAACAGAAGTGAGGGAGAAAAAACCAAAAGCTTATTATGAACCTGTCCTTTCAGAGGATGAATCAACGGAAACTGATGGAGAGTCTTATCCTGCTACAGAAGTGCCAGCCAAACAACGAACAAATGAGGAAGAAAGTTCATTAATACAGATCCTCGATTCATGGTATAGCAACAAAGAAGACAGTAGGAAAGACATGGCAGAAAATAGCGATGAGAGTCGGAAGCTTTCTAGTTTAGGTCCCAAAAGTGAAGCAAATACAGTAAATTCTGCTAGAATGCGAAGACATCAAAAGAGCTATTCTTTTGTTTCAGACAACGATAAAAATGACAAAGAAAAGCTGATTGATGGTATTTTGGGTACCTTGAAGAAATCAAGCGGGTCGCAGATACATAACTGA 2997 41.88 MRLLCSLSSLCSSSSSSSSSVSFPTRALLLHFSQLSTSLRRPDEESRNVRVSVWWDFENCNIPADINVFKVSHLITAAVRANGIKGPVQITAFGDVLQLSRANQEALSSIGISLTHIPRGGKNSADRSLLVDLMYWVSQNPPPAHIFLISGDRDFASILHRLRMNNYNVLLASPETAPGVLCSAASIMWHWHALIKGENLAGRHFNHPPDAPYGSWYGHYKAPLEDPFPINEQPSSLRADEVSELSSDPKPRSIPKTVVRQIHNILQLYPEGLRITELRSVLGKSCIPMDRDFYGYKKFSRFLLSMPHILELQRDDDGQHLVRSVTPRCPNGPLESSRGTSGNGTEEQAPNLIVKLNNNGSSRESTCVVVLPSNAQDTQLKVKPSSKFGKPIDEAMEGEASGCPVSEPHVIEDSKQTSKLEPDSNITPSDEQHLKANTGFLSRIWRRILGNNDTNSENGSHCISAKCSTSDDTSKLKSSSGLVATYSSDSLGEAKTEGRTAKPMSEDANSVHQVSNSPDRESAKLQKAGIVTSAYDGKSSSNLGLFGSIRNWFKFWGKKTENGQVSKHCCEQNQLKNQSGKHHLFSSNFFWQEMQSFMETPKGVEIISQSKTRSEIAQNLLEGGPPVLKSLSTSDLFDFLELLISDKKWVEEFPSETNPFKLTLSIARKSSCTESLHRANGLASILINKKSQGSFQGSGEHDSDSDRKNENIPQTTTMTKNKFPDRTRCEILSDCQKLVDEILRDHPEGYNMGSFSGLFLEKYGYNLDLQKLGYPNLASLLQIIPGVTIVSNHIFPTSKAPKVSKLETALVSDPEKITSDSVANSDNESYDLPRKEDDFESAWEELGPACTDCSNVNKEESALSSETTEVREKKPKAYYEPVLSEDESTETDGESYPATEVPAKQRTNEEESSLIQILDSWYSNKEDSRKDMAENSDESRKLSSLGPKSEANTVNSARMRRHQKSYSFVSDNDKNDKEKLIDGILGTLKKSSGSQIHN 998
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 819383 824096 + ClCG02G000740.1 Cla02g00078 266204

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00078 998 ProSiteProfiles OST-type HTH domain profile. 731 805 IPR025605 -
Cla02g00078 998 MobiDBLite consensus disorder prediction 455 474 - -
Cla02g00078 998 MobiDBLite consensus disorder prediction 945 963 - -
Cla02g00078 998 MobiDBLite consensus disorder prediction 692 720 - -
Cla02g00078 998 MobiDBLite consensus disorder prediction 908 922 - -
Cla02g00078 998 PANTHER EMB|CAB71880.1 9 945 - -
Cla02g00078 998 MobiDBLite consensus disorder prediction 325 348 - -
Cla02g00078 998 Gene3D - 43 191 - -
Cla02g00078 998 MobiDBLite consensus disorder prediction 923 944 - -
Cla02g00078 998 Gene3D - 727 794 IPR041966 -
Cla02g00078 998 Gene3D - 255 326 IPR041966 -
Cla02g00078 998 PANTHER LIMKAIN B LKAP 9 945 IPR024768 GO:0005777|GO:0010468|GO:1903231
Cla02g00078 998 MobiDBLite consensus disorder prediction 964 978 - -
Cla02g00078 998 MobiDBLite consensus disorder prediction 814 838 - -
Cla02g00078 998 CDD LOTUS 732 790 - -
Cla02g00078 998 ProSiteProfiles OST-type HTH domain profile. 254 326 IPR025605 -
Cla02g00078 998 MobiDBLite consensus disorder prediction 814 828 - -
Cla02g00078 998 Pfam OST-HTH/LOTUS domain 731 793 IPR025605 -
Cla02g00078 998 Pfam OST-HTH/LOTUS domain 256 322 IPR025605 -
Cla02g00078 998 MobiDBLite consensus disorder prediction 506 522 - -
Cla02g00078 998 MobiDBLite consensus disorder prediction 231 253 - -
Cla02g00078 998 MobiDBLite consensus disorder prediction 864 883 - -
Cla02g00078 998 MobiDBLite consensus disorder prediction 854 978 - -
Cla02g00078 998 CDD LOTUS 255 323 - -
Cla02g00078 998 MobiDBLite consensus disorder prediction 490 522 - -
Cla02g00078 998 CDD PIN_limkain_b1_N_like 50 174 - -
Cla02g00078 998 MobiDBLite consensus disorder prediction 330 348 - -
Cla02g00078 998 Pfam NYN domain 50 185 IPR021139 GO:0004540
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00078 - - - cpep:111796232 1343.18
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00699 Cla-Chr1:8209394 Cla02g00078 Cla-Chr2:819383 5.25E-39 dispersed
Cla02g00078 Cla-Chr2:819383 Cla05g01068 Cla-Chr5:11024577 2.09E-28 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1214 . Blo16g00517 . . . Bpe13g00010 . . . Cmo20g01089 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g01353 . . . . Bma06g00530 . . . . Cma20g01079 . . . Cpe16g00066 Bhi10g02348 . . . . . . Cla02g00078 Cam02g0081 Cec02g0083 Cco02g0075 Clacu02g0079 Cmu02g0077 Cre02g0417 Lsi10g00700 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005338 1 4 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla02g00078 Cla_Chr02 FPKM 20.760717 22.710373 40.541687 42.918648 20.364389 16.073093 21.768818 37.084393 38.53006 39.153423