Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00079 ATGGCGAAATCCCCAGAAAATGAACATCCTCACAAGGCTTTTGGTTGGGCTGCTCGAGATTCTTCTGGCTTACTCTCCCCTTTTCATTTCTCTCGAAGGGAAAATGGTGATGATGATGTGTCTATCAAAGTCCTTTACTGTGGGGTCTGCCACTCTGATCTGCACATGCTCAAGAATGACTGGGGTTCTACAGATTATCCTGTAGTACCAGGGCATGAGATTGTTGGTGTTGTGACTTCTGTTGGGAAAAATGTGAAGAAATTCAAAGCAGGAGACGAAGTTGGGGTCGGTGTCATAGTTGGATCTTGTAGAAATTGTGAAAACTGCAAACAAGACTTGGAGAGTTACTGCTCCAAGATGGAATATACTTACAATTCTCCTGGAGTTGATGGAACGAAGAATTACGGTGGTTATTCGGATAAGATCGTTGTCGATCAGCATTTTGTTGTGAGATTTCCTAAAAACTTAGCTCTTGATGCTGGTGCTCCACTCCTATGTGCTGGGATTACAGTTTATAGCCCAATGAGACATTTTGGAATGACTGAACCTGGTAAGCATTTGGGTGTGGCTGGACTTGGTGGGCTTGGTCATGTTGCTGTTAAGTTTGGTAAGGCATTTGGGTTGAAAGTTACTGTCATTAGTACCTCTTCTAGGAAGAAGGAAGAAGCAATCGACAGGCTCGGTGCGGATGCTTTCGTTGTTTCAAGTGATCCCGAACAATTGAAGGCTGCCATGGGAACTATGGATTACATTTTGGACACAATATCTGCTGTTCATCCTCTTGATCCGTTGATTAGTCTGCTAAACCTCAATGGAAAATTAGTCGCTGTTGGTTTACCTAACAAGCCACTTGAACTATCGCTCGGGTGTCTTGTTTCTGGTAGGAGGCTGGTTGCTGGAAGCAACTTTGGAGGACTGAAAGAGACACAAGAGATGTTAGATTTCTGTGGAAAACACAATATTACAGCAGAAATTGAGCTCATTAAGATGGATGCCATTAATTCGGCTATCGAAAGGCTTGGGAAAGCTGATGTTAAATATCGGTTTGTGATCGACATCGGAAACTCTTTCAAATAG 1077 43.08 MAKSPENEHPHKAFGWAARDSSGLLSPFHFSRRENGDDDVSIKVLYCGVCHSDLHMLKNDWGSTDYPVVPGHEIVGVVTSVGKNVKKFKAGDEVGVGVIVGSCRNCENCKQDLESYCSKMEYTYNSPGVDGTKNYGGYSDKIVVDQHFVVRFPKNLALDAGAPLLCAGITVYSPMRHFGMTEPGKHLGVAGLGGLGHVAVKFGKAFGLKVTVISTSSRKKEEAIDRLGADAFVVSSDPEQLKAAMGTMDYILDTISAVHPLDPLISLLNLNGKLVAVGLPNKPLELSLGCLVSGRRLVAGSNFGGLKETQEMLDFCGKHNITAEIELIKMDAINSAIERLGKADVKYRFVIDIGNSFK 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 827566 831443 + ClCG02G000750.1 Cla02g00079 266205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00079 358 PANTHER ALDEHYDE REDUCTASE 2 357 - -
Cla02g00079 358 Gene3D - 167 323 - -
Cla02g00079 358 SUPERFAMILY GroES-like 20 185 IPR011032 -
Cla02g00079 358 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 71 85 IPR002328 GO:0008270|GO:0016491
Cla02g00079 358 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 158 321 IPR036291 -
Cla02g00079 358 CDD CAD1 14 352 - -
Cla02g00079 358 Pfam Alcohol dehydrogenase GroES-like domain 38 151 IPR013154 -
Cla02g00079 358 Gene3D - 16 353 - -
Cla02g00079 358 SMART PKS_ER_names_mod 23 351 IPR020843 GO:0016491
Cla02g00079 358 PANTHER LOW QUALITY PROTEIN: 8-HYDROXYGERANIOL DEHYDROGENASE-LIKE 2 357 - -
Cla02g00079 358 Pfam Zinc-binding dehydrogenase 194 315 IPR013149 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00122 Cla-Chr1:1137091 Cla02g00079 Cla-Chr2:827566 1.80E-112 dispersed
Cla01g01784 Cla-Chr1:32783667 Cla02g00079 Cla-Chr2:827566 6.78E-171 dispersed
Cla02g00079 Cla-Chr2:827566 Cla05g01605 Cla-Chr5:27322767 9.51E-142 dispersed
Cla02g00079 Cla-Chr2:827566 Cla02g00080 Cla-Chr2:841745 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00079 K00083 - csv:101205228 671.774