Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00099 ATGGGTTCTAAATCCCAAGTCCTATTGAACCCACAAGCTTTGTTTGAAGATCATCAAGATCATGAAGTGGCAGCAAATTCTCAAATGGGTTTCTTCAATTTCCCTTCAAACTTAACTTTTCTCCAACTTCCTTCAATTCCTCAAACCCATTCTCCTTCCCCTCCATTTGATCCTCCAAATTTCTCCATTTCTAGTAATAATACTAATAATAATAACAATAATAGTAATTCCAATCTCAATGAAACCCTACTTTCTTCTTCTCTTTTGCCCCTCAAGCCCTCCCTTTCCTATGAATTTGCACCTCAACACCTCCTTTCCTTGCAAACATCCACTCCAAATCTATGGCCATGGGGAGAGATTGGAGAAAAGTTGATGAATGGGAAGAGATCAAATAATGAGAATCATCAATTGGGAGTGTCAACAATGAAGATGAAGAAAATGAAAGGAAGAAGAAAAGTGAGAGAACCAAGATTCTCATTCAAGACCATGAGCGATGTTGATGTTCTTGATGATGGTTACAAATGGCGAAAATACGGACAGAAAGTGGTCAAAAACACACAACATCCTAGAAGCTATTATCGTTGTACACAAGATCACTGTAGGGTAAAGAAACGAGTAGAAAGATTAGCTGAGGATCCAAGAATGGTGATTACAACTTATGAAGGAAGACATGTTCATTCTCCTTCCCATGATTCTGAAGACTCCGAAGCTCAAACCCATCTCAATAATTTCTTTTGGTACCTGTTTTTTTCTTCCCTCTCTCTCTCTCAATAA 774 38.11 MGSKSQVLLNPQALFEDHQDHEVAANSQMGFFNFPSNLTFLQLPSIPQTHSPSPPFDPPNFSISSNNTNNNNNNSNSNLNETLLSSSLLPLKPSLSYEFAPQHLLSLQTSTPNLWPWGEIGEKLMNGKRSNNENHQLGVSTMKMKKMKGRRKVREPRFSFKTMSDVDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQDHCRVKKRVERLAEDPRMVITTYEGRHVHSPSHDSEDSEAQTHLNNFFWYLFFSSLSLSQ 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1107478 1109891 - ClCG02G000930.1 Cla02g00099 266225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00099 257 Gene3D WRKY domain 156 222 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cla02g00099 257 PANTHER WRKY TRANSCRIPTION FACTOR 13-RELATED 57 240 - -
Cla02g00099 257 MobiDBLite consensus disorder prediction 45 79 - -
Cla02g00099 257 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 57 240 IPR044810 GO:0003700
Cla02g00099 257 SMART WRKY_cls 169 228 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla02g00099 257 Pfam WRKY DNA -binding domain 170 226 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla02g00099 257 ProSiteProfiles WRKY domain profile. 164 229 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla02g00099 257 SUPERFAMILY WRKY DNA-binding domain 161 228 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cla02g00099 257 MobiDBLite consensus disorder prediction 60 79 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla01g01558 Cla02g00099 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00099 Cla-Chr2:1107478 Cla08g01030 Cla-Chr8:23025947 7.33E-36 dispersed
Cla01g01558 Cla-Chr1:30233134 Cla02g00099 Cla-Chr2:1107478 5.48E-56 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60561 PF03106 WRKY 4.60E-24 CL0274 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00099 - - cmo:103497483 384.03