Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00112 ATGGCTTCTTCAAATCCCATCTCTCTTCTCACATTTCTCACTTTCCTCTTCCTCCTCTCTTCTTCATCTTCTGCTGTAGTTCCAACCGCAGAGATTTGCCAATCCACCGCCTCCCCGTCCTTCTGCAACTCTTTCCTTCCCAACTCCGCGGCCTCGGTCCACTCCCATTGTCGCTTCACTCTCCGCAATGCCCTCGACCATGCACATGCCTTCTTGGCACTCGTCGACTCTCACCTCAGCCTTTTCCCCTCCCTCTCCGCCCTCCACGACTGCCGTGGCCTCGCGGAAGCCAACCTCGACTTTATATCCCAAACTTTTTCCATAGTCAACTCCACAGCCATGGTCCTTCCTTATTACCAAGCCCATGAGATGGTGTCCTTAATGAGTGCAATGATCACCAATGAAGACACTTGTTATGACGGGTTGACGGGTTTAGGCTCGGCCTTGGGCTTGGTTGATAAGGTGTTGGAGGCCATCTCTTTTGATAGAAAGCTATATAGTTTGTACCTTTCGTTGTTCAAAATGGGTTGGGTTTCTGAGGACATGAAGGCTCCTATGTTGCCAAATATGAACCATTTTGGGGTCGGGAAAGGGCAGTTGAAGCTTAAAATGTCGCCCAAAGACCGAGCGTATTATGAGCGCTTGGTGCATAGGAAGAAGCCGGCGGCCGCTAGAAGGCTTCTTCAGACCAATTACCAAGATGATGGAATTTTAATCAATGGCATGGTTGCGGTGGATCAAAATGGAGCATACGATTTTACAACCATCAGCGACGCCATTGCGGCCGCTCCGAACAAGTCAGCTGTCGCTGACGGATACTTCTTGATCTTCGTGACCGCTGGGATTTACAATGAGAGTGTGTTGGTCCCAAAATATAAAAGGTATGTGTTGATGATGGGAGAAGGTAACAACCAAACTATCATCACCGGCAACAAAAACGTCATTGATGGTTCCACCACTTTCAATAGCGCAACCGTTGCCGTGGAGGGAATAGGGTTTTTCGGAGTAAACCTAACGATCAGCAACACGGCTGGGGCCGCCAAACACCAAGCGGTGGCATTGCGAGTAAGTGCCGACAATGTGACATTATATAGTTGCATATTCGAAGGCTATCAAGACACTCTCTACACACACTCCCTCCGTCAATTCTATAGAGAATGTGATATCTATGGTACTGTCGATTTCATCTTTGGCAATGCTGCCGTCGTTTTGCAAAACTGCAACATCTACGCCCGTCTCCCAATGAGTGGCCAGTTCAACGCCCTCACGGCGCAGGGCCGAACCGACCCCAATCAGAACACCGGAACCTCCATCCACAACTGCACCATCAAGCCGACGTCGGAGCTCGCGGCAAGCCCCGCCACGAAGAGCTACTTAGGGCGGCCGTGGAAGGAATATTCTCGGACAATTTATATGCAATCGTTTATTGATTCCTTTATTGATCCTGCAGGCTGGAAGGAGTGGGACGGCACTTTGAATTTAAACACTTCTTATTACGCCGAGTTTAATAACTCGGGGCCAGGCTCCGACACTTCACGGCGGGCTTCGTGGGTGGTCGGTGTCATCAACGCCACTGTTGCTAGTAACTTCACAGTGTCTCAATTCTTAGCTGGGGATCAATGGCTACCGCCTACCGCCGTGCCCTACACCGGTGGTTTGATATCATAA 1668 50.06 MASSNPISLLTFLTFLFLLSSSSSAVVPTAEICQSTASPSFCNSFLPNSAASVHSHCRFTLRNALDHAHAFLALVDSHLSLFPSLSALHDCRGLAEANLDFISQTFSIVNSTAMVLPYYQAHEMVSLMSAMITNEDTCYDGLTGLGSALGLVDKVLEAISFDRKLYSLYLSLFKMGWVSEDMKAPMLPNMNHFGVGKGQLKLKMSPKDRAYYERLVHRKKPAAARRLLQTNYQDDGILINGMVAVDQNGAYDFTTISDAIAAAPNKSAVADGYFLIFVTAGIYNESVLVPKYKRYVLMMGEGNNQTIITGNKNVIDGSTTFNSATVAVEGIGFFGVNLTISNTAGAAKHQAVALRVSADNVTLYSCIFEGYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVLQNCNIYARLPMSGQFNALTAQGRTDPNQNTGTSIHNCTIKPTSELAASPATKSYLGRPWKEYSRTIYMQSFIDSFIDPAGWKEWDGTLNLNTSYYAEFNNSGPGSDTSRRASWVVGVINATVASNFTVSQFLAGDQWLPPTAVPYTGGLIS 555
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1297247 1300710 + ClCG02G001090.2 Cla02g00112 266238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00112 555 Pfam Pectinesterase 243 539 IPR000070 GO:0030599|GO:0042545
Cla02g00112 555 Gene3D Invertase/pectin methylesterase inhibitor family protein 30 175 IPR035513 -
Cla02g00112 555 PANTHER PECTINESTERASE 14 553 - -
Cla02g00112 555 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 31 175 IPR035513 -
Cla02g00112 555 Pfam Plant invertase/pectin methylesterase inhibitor 31 145 IPR006501 GO:0004857
Cla02g00112 555 SUPERFAMILY Pectin lyase-like 240 552 IPR011050 -
Cla02g00112 555 Gene3D - 241 555 IPR012334 -
Cla02g00112 555 ProSitePatterns Pectinesterase signature 2. 389 398 IPR033131 -
Cla02g00112 555 PANTHER PECTINESTERASE 14 553 - -
Cla02g00112 555 CDD PMEI-like_3 32 177 - -
Cla02g00112 555 SMART PMEI_2 22 172 IPR006501 GO:0004857
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00112 Cla-Chr2:1297247 Cla09g00511 Cla-Chr9:4824313 0 dispersed
Cla02g00112 Cla-Chr2:1297247 Cla05g02243 Cla-Chr5:34086014 7.55E-09 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00112 K01051 - csv:101216984 942.954