Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00118 ATGGTCGAACATGATAGACCCATCAAGCCATCTCGTCGACCCAACTCCCAGAATCTGTTAAGAGTTGTAGCAATTCAGATAGAAAGGAAACCAGTGGAAGAGAAAAATGGCCAAATGCTTTGTTTTGAATTTAACTTTGGACTGAACTTCAAGAATCAAACTGATTGTGAGAGACAGTGTGAATCAGAGGAGGATGATGATGCTCTTTTGAAGCCAAGAAAGAAAATGGGTGGTTGTGTCTCTACAAGCAGCCATAGTACATGCAGTAGCCAAAGCAATGGGGAAGCAATTTCTTCTTCATGTATGGGAATTGGATTTCGAGGTCGAAAGCGAACGAAAAGAACATTCTCCGACCATGTTTATGCTCTTCAGAATCTTCCTTCAGCTCCCAACAGGATATTCATGAATGGAAAAAGTCGTTCTTCTTGTATTTTCACGCAACAGGGTCGCAAGGGCATAAACCAGGACGCCATGGTTGTGTGGGAAGATTTCATGTCGGAGGACACGATCTTTTGTGGTGTATTCGATGGACATGGACCTTACGGTCATCTCGTTGCTCGAAAAGTGAGGGATACATTGCCTATAAAGTTGCTGTCATTCTTCCAGTCTCCTCAGTTGAAGCAAAATGACTCTGGTAAAACCTGTTTCCAGAGGAATTTGAAGACACCTCCAGATTGTGAAGATTCTGAGAAAGATGGTTTTGTAGAGGACTCGCAGAATTCGGTATGGAGAGATGCTTTTTTGAACTCGTATAAAGCTATGGATAAGGAGTTGAGATCACACCCTAATCTGGACTGCTTTTGTAGTGGTAGTACTGCAGTCACCATAGTTAAACAGGGGTCAAATCTCTTCATGGGGTATATAGGCGACTCAAGAGCAATCCTTGCCTCGAAGGACGCCAATGATTCCACAGTGGCCGTCCAATTGACCGTGGATCTTAAGCCAGATTTACCAAGAGAAGCTGAAAGAATAAAGCGGTGTAAAGGTAGGGTCTTTGCATTGCAGGATGAGCCTGAAGTGCCAAGGGTGTGGTTACCTTTCGATGATGCGCCCGGTTTAGCAATGGCTCGAGCATTTGGCGACTTCTGTTTGAAAGAATATGGAGTTATCTCTATACCCGAATTCTCTCATCGAACCCTCACCGACGCTGATCAGTTCATCGTTCTTGCATCAGATGGGGTATGGGATGTGTTGAGCAATGAAGAGGTGGTTGACATAGTGTCCTCAGCCCCAACCCGGGCATCAGCTGCAAGGTCCGTGGTGGACTCGGCTGCTCGTGAATGGAAACTCAAATACCCTACCTCAAAAATGGATGATTGTGCTGTCGTCTGCTTATTTTTGGACAGGAGGATGGACTCTGAATCTGACTGTGACGAACAAGGCTTCTCATCTGCAACATTGCGTAGTAATCATTCGGGTACTGCTATCGAGTCCGATGATGGCCAGAGGTCTGAGCCATGTTTGCAAAGGAATAACACTGTCAGATCATCCGAAGAAGGCAAGGGATTACCTGTCGAAGACAGGGAGGTTGGTGCTGCTGTACCTGCAGAAGATCAAAACTGGTTGGGTTTGGAAGGAGTCACTCGAGTGAACTCACTTGTTCAACTTCCTAGATTTTCCGAGGAAAGGCCAGTGTCATAG 1641 45.52 MVEHDRPIKPSRRPNSQNLLRVVAIQIERKPVEEKNGQMLCFEFNFGLNFKNQTDCERQCESEEDDDALLKPRKKMGGCVSTSSHSTCSSQSNGEAISSSCMGIGFRGRKRTKRTFSDHVYALQNLPSAPNRIFMNGKSRSSCIFTQQGRKGINQDAMVVWEDFMSEDTIFCGVFDGHGPYGHLVARKVRDTLPIKLLSFFQSPQLKQNDSGKTCFQRNLKTPPDCEDSEKDGFVEDSQNSVWRDAFLNSYKAMDKELRSHPNLDCFCSGSTAVTIVKQGSNLFMGYIGDSRAILASKDANDSTVAVQLTVDLKPDLPREAERIKRCKGRVFALQDEPEVPRVWLPFDDAPGLAMARAFGDFCLKEYGVISIPEFSHRTLTDADQFIVLASDGVWDVLSNEEVVDIVSSAPTRASAARSVVDSAAREWKLKYPTSKMDDCAVVCLFLDRRMDSESDCDEQGFSSATLRSNHSGTAIESDDGQRSEPCLQRNNTVRSSEEGKGLPVEDREVGAAVPAEDQNWLGLEGVTRVNSLVQLPRFSEERPVS 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1360519 1364728 + ClCG02G001150.2 Cla02g00118 266244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00118 546 CDD PP2Cc 140 447 IPR001932 -
Cla02g00118 546 MobiDBLite consensus disorder prediction 458 518 - -
Cla02g00118 546 PANTHER ALPHABET, ISOFORM E-RELATED 76 534 - -
Cla02g00118 546 Pfam Protein phosphatase 2C 242 424 IPR001932 -
Cla02g00118 546 SMART PP2C_4 130 445 IPR001932 -
Cla02g00118 546 SUPERFAMILY PP2C-like 131 448 IPR036457 -
Cla02g00118 546 PANTHER PROTEIN PHOSPHATASE 2C 52-RELATED 76 534 - -
Cla02g00118 546 Gene3D - 132 450 IPR036457 -
Cla02g00118 546 ProSiteProfiles PPM-type phosphatase domain profile. 141 447 IPR001932 -
Cla02g00118 546 MobiDBLite consensus disorder prediction 458 498 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00118 Cla-Chr2:1360519 Cla08g00451 Cla-Chr8:13746133 7.69E-134 dispersed
Cla03g01012 Cla-Chr3:19168090 Cla02g00118 Cla-Chr2:1360519 9.06E-120 transposed
Cla04g00673 Cla-Chr4:21449765 Cla02g00118 Cla-Chr2:1360519 2.41E-112 transposed
Cla05g01817 Cla-Chr5:30126378 Cla02g00118 Cla-Chr2:1360519 2.21E-92 transposed
Cla10g00340 Cla-Chr10:4469979 Cla02g00118 Cla-Chr2:1360519 4.63E-99 transposed
Cla11g00927 Cla-Chr11:16035128 Cla02g00118 Cla-Chr2:1360519 7.34E-145 transposed
Cla02g00118 Cla-Chr2:1360519 Cla02g01709 Cla-Chr2:31950483 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00118 - - csv:101204594 915.22