Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00126 ATGGGTTGGAAGAGATCTTCGAGGAACGGCAATTTGAGGATCTGGGTGCAGGTTTTAGTCGGATTCGTGATCTGCGCAGCCCAAGTTCTTTTCGGAATTACGAATCCAGGGGATTTTTCTGCTATTAGTAGCTTACATACCGCACTGGGACTCCCCAGTCTTCCTGGATGGGGCATCGGGCAAGACCCATGCGGAGACGCATGGCAGGGTGTTGTGTGTAATGATTCGAGCATCATTAAAATAATCATTAATGCTGCTAATTTGGGAGGTGAACTTGGTGACAACTTGGGATTGTTTTCTTCGATTCAAACAATTGATTTAAGCAACAATCATATAGGGGGAAGTATACCATCCAGTTTACCTGTTACCATGCAGAACTTTTTTCTTTCAGCTAATGAGTTCACGGGAAGTATTCCGAGTTCATTATCATCTTTGATTCAACTGACAGCGATGTCGTTGAATGATAACAAATTAAGTGGACAAATACCAGATTCCTTTGAAGCCATTTCTCAATTGGTCAATTTAGACTTGTCCAATAACAACTTGAGTGGGCCACTGCCTCCATCTGTAAGCAATTTATTGGCATTGACCACCCTGCATTTGCAGAACAATCAGCTGTCGGGGACCCTTGATGTTCTACAAGACCTTCCACTGAAAGACTTGAATATAGAGAACAACCTTTTTTCTGGACCCATACCTGAGAAGGTGCTGAGTATCCCTAATTTTAGAAAGGATGGAAATCCATTTAATTCTTCTGTTTCGCCGACATCTCCTCCTGTATCTCCTTCTCCACCATCAAAGCCAGCACCAGCACCGCCAGTTTCTGGAGCACCACCAGTTTCTGGAGCACCACCATCTTCTCAACAAAAACCTAAGAAACAGGCTGATGGACCATCGGCACCAGAGGAATCCAGTTCTGGAAAAAATAAGAAAAGCACTAAAAGGGTTGTTTTAATAACAATTGCAGTGGTTTTGTCATTCATAATTTTGGTCTTGGCATGTGTGCTCTTTATGCCAAGGTGCAGAAGAAGAAGAGTTGATAGTGTATCCAAGCGACATCAGATAGGTGCTTATAGAGGTGAGAGAGAGAATGCTGGAAATCAGGGAGCCATGCCCCATACAAATGATCAGATTCCTAAAGTTCCAAAAGAGCCAGTTGTAAGGCCGAAGCAGGAAACTCAAACAGAGGTTCAGAAGGTTCCAAAAGATCATGAAGAGAGAAAGAAAAACATGCCAAGAATGAGCGCTATTCCAAAGAAGGATCATCATGAACAATATACAAACAGCTTTTCACAAGAGAATCTTCTAGGAGAAGGAATGCTGGGGAGTGTTTATAGGGCACAGCTTCCCAGTGGGAAGTTACTGGCCGTCAAGAAACTGGATAAGAGAGCATTCAGTCAGCAAAAGGATGATGAATTTCTTGAGTTAGTGAATAATATCGATAGAATCAGGCATGCTAATGTGGTCGAGCTCAGTGGTTACTGTGCAGAGCATGGTGAAAGGCTTCTTATCTATGAGTATTGTAGTGGTGGAACATTGCAGGATGCACTGCACTCAGATGAAGAGTTCAGAAAGAAACTTTCGTGGAATGCCCGCATTAGAATGGCTCTTGGGGCTGCAAGAGCCTTGGAGTATCTGCATGAGGTCTGTCAGCCTCCTGTTATTCATAGGAATTTCAAGTCTGCGAATGTCCTACTTGATGATGATCTTTCAGTGCGTGTTTCAGATTGTGGGCTGGCTCCATTAATATCAAAAGGAGCTGTTAGTCAGCTATCTGGTCAGCTTCTGACAGCATATGGTTACGGAGCGCCAGAATTTGAATCAGGAGTTTATACACTTGAGAGTGACGTTTACAGCTTCGGTGTGGTTATGCTGGAACTTCTAACTGGCCGGATGTCTTATGACAGAACAAGGACCCGAGGTGAGCAGTTCCTAGTCAGGTGGGCGATTCCACAGCTTCACGACATAGAGGCATTGACAAGCATGGTTGATCCTTCACTCAATGGTCAATACCCTGCCAAATCCTTATCGTACTTTGCCGATATCATATCAAAATGTGTTCAGTCGGAGCCTGAATTCCGGCCACCAATGTCGTCGGTTGTTCAGGACTTGCTCAACATGATAAGGAGAGAACCACTTGGCAGTGGTTCAAGTGAAGATTGA 2163 43.97 MGWKRSSRNGNLRIWVQVLVGFVICAAQVLFGITNPGDFSAISSLHTALGLPSLPGWGIGQDPCGDAWQGVVCNDSSIIKIIINAANLGGELGDNLGLFSSIQTIDLSNNHIGGSIPSSLPVTMQNFFLSANEFTGSIPSSLSSLIQLTAMSLNDNKLSGQIPDSFEAISQLVNLDLSNNNLSGPLPPSVSNLLALTTLHLQNNQLSGTLDVLQDLPLKDLNIENNLFSGPIPEKVLSIPNFRKDGNPFNSSVSPTSPPVSPSPPSKPAPAPPVSGAPPVSGAPPSSQQKPKKQADGPSAPEESSSGKNKKSTKRVVLITIAVVLSFIILVLACVLFMPRCRRRRVDSVSKRHQIGAYRGERENAGNQGAMPHTNDQIPKVPKEPVVRPKQETQTEVQKVPKDHEERKKNMPRMSAIPKKDHHEQYTNSFSQENLLGEGMLGSVYRAQLPSGKLLAVKKLDKRAFSQQKDDEFLELVNNIDRIRHANVVELSGYCAEHGERLLIYEYCSGGTLQDALHSDEEFRKKLSWNARIRMALGAARALEYLHEVCQPPVIHRNFKSANVLLDDDLSVRVSDCGLAPLISKGAVSQLSGQLLTAYGYGAPEFESGVYTLESDVYSFGVVMLELLTGRMSYDRTRTRGEQFLVRWAIPQLHDIEALTSMVDPSLNGQYPAKSLSYFADIISKCVQSEPEFRPPMSSVVQDLLNMIRREPLGSGSSED 720
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1403708 1412529 + ClCG02G001240.1 Cla02g00126 266252

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00126 720 Gene3D Transferase(Phosphotransferase) domain 1 509 711 - -
Cla02g00126 720 MobiDBLite consensus disorder prediction 281 306 - -
Cla02g00126 720 Pfam Protein tyrosine and serine/threonine kinase 433 704 IPR001245 GO:0004672|GO:0006468
Cla02g00126 720 MobiDBLite consensus disorder prediction 255 280 - -
Cla02g00126 720 Gene3D Phosphorylase Kinase; domain 1 391 507 - -
Cla02g00126 720 SUPERFAMILY Protein kinase-like (PK-like) 415 704 IPR011009 -
Cla02g00126 720 Gene3D Ribonuclease Inhibitor 39 256 IPR032675 -
Cla02g00126 720 ProSiteProfiles Protein kinase domain profile. 430 708 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla02g00126 720 MobiDBLite consensus disorder prediction 362 410 - -
Cla02g00126 720 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 1-RELATED 424 718 - -
Cla02g00126 720 SUPERFAMILY L domain-like 54 241 - -
Cla02g00126 720 MobiDBLite consensus disorder prediction 247 312 - -
Cla02g00126 720 PANTHER OS01G0253100 PROTEIN 23 393 IPR045271 GO:0004714|GO:0006468
Cla02g00126 720 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 1-RELATED 23 393 - -
Cla02g00126 720 MobiDBLite consensus disorder prediction 383 410 - -
Cla02g00126 720 PANTHER OS01G0253100 PROTEIN 424 718 IPR045271 GO:0004714|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00126 - - - mnt:21404988 854.744
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00126 Cla-Chr2:1403708 Cla09g00135 Cla-Chr9:1379013 1.13E-38 dispersed
Cla01g00957 Cla-Chr1:13509629 Cla02g00126 Cla-Chr2:1403708 0 transposed
Cla08g00508 Cla-Chr8:15265579 Cla02g00126 Cla-Chr2:1403708 1.70E-158 transposed
Cla10g01655 Cla-Chr10:32235033 Cla02g00126 Cla-Chr2:1403708 3.35E-27 transposed
Cla01g02225 Cla-Chr1:36225544 Cla02g00126 Cla-Chr2:1403708 1.10E-17 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla02g00126 . 34 718 Strubbelig Receptor Gene Family AT4G03390 60.0 7.6e-196 681.0
Cla01g02225 . 59 605 Strubbelig Receptor Gene Family AT4G03390 50.3 3.3e-130 463.0
Cla09g00135 . 540 879 Strubbelig Receptor Gene Family AT4G03390 51.2 2.6e-87 320.5
Cla10g01655 . 1 712 Strubbelig Receptor Gene Family AT5G06820 51.1 8.0e-171 597.8
Cla08g00508 . 22 707 Strubbelig Receptor Gene Family AT1G78980 60.4 1.9e-193 672.9
Cla01g02225 . 307 605 Strubbelig Receptor Gene Family AT1G78980 52.7 4.2e-84 309.7
Cla08g00508 . 20 685 Strubbelig Receptor Gene Family AT3G13065 54.4 6.8e-148 521.5
Cla09g00135 . 541 877 Strubbelig Receptor Gene Family AT3G13065 51.3 1.6e-91 334.3
Cla02g00126 . 430 708 Strubbelig Receptor Gene Family AT3G13065 50.4 5.9e-75 279.3
Cla01g00957 . 388 681 Strubbelig Receptor Gene Family AT1G11130 53.2 1.4e-84 311.2
Cla10g01655 . 1 712 Strubbelig Receptor Gene Family AT5G06820 51.1 8.0e-171 597.8
Cla02g00126 . 34 718 Strubbelig Receptor Gene Family AT4G03390 60.0 7.6e-196 681.0
Cla01g02225 . 59 605 Strubbelig Receptor Gene Family AT4G03390 50.3 3.3e-130 463.0
Cla09g00135 . 540 879 Strubbelig Receptor Gene Family AT4G03390 51.2 2.6e-87 320.5
Cla08g00508 . 20 685 Strubbelig Receptor Gene Family AT3G13065 54.4 6.8e-148 521.5
Cla09g00135 . 541 877 Strubbelig Receptor Gene Family AT3G13065 51.3 1.6e-91 334.3
Cla02g00126 . 430 708 Strubbelig Receptor Gene Family AT3G13065 50.4 5.9e-75 279.3
Cla08g00508 . 22 707 Strubbelig Receptor Gene Family AT1G78980 60.4 1.9e-193 672.9
Cla01g02225 . 307 605 Strubbelig Receptor Gene Family AT1G78980 52.7 4.2e-84 309.7
Cla07g01353 . 77 817 Strubbelig Receptor Gene Family AT1G53730 50.4 2.3e-178 622.9
Cla09g00135 . 49 904 Strubbelig Receptor Gene Family AT1G53730 50.5 2.1e-171 599.7
Cla08g00508 . 20 693 Strubbelig Receptor Gene Family AT1G53730 50.4 1.3e-154 543.9
Cla01g00957 . 7 689 Strubbelig Receptor Gene Family AT1G53730 50.9 4.7e-147 518.8
Cla01g02225 . 312 605 Strubbelig Receptor Gene Family AT3G14350 51.2 2.4e-76 283.9
Cla01g00957 . 201 711 Strubbelig Receptor Gene Family AT4G22130 68.2 4.4e-177 618.2
Cla09g00135 . 538 896 Strubbelig Receptor Gene Family AT4G22130 57.4 2.2e-112 403.3
Cla07g01353 . 509 824 Strubbelig Receptor Gene Family AT4G22130 60.1 1.8e-109 393.7
Cla02g00126 . 427 720 Strubbelig Receptor Gene Family AT4G22130 60.7 1.7e-104 377.1
Cla08g00508 . 360 707 Strubbelig Receptor Gene Family AT4G22130 52.4 1.3e-99 360.9
Cla01g02225 . 317 605 Strubbelig Receptor Gene Family AT4G22130 59.8 4.8e-99 359.0
Cla10g01655 . 374 696 Strubbelig Receptor Gene Family AT4G22130 51.7 9.7e-92 334.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003611 2 1 2 2 2 1 2 1 1 1 1 1 2 1 0 2 1 1 2 1 1 1 1 0 1 1 1 1 2 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80318 PF07714 PK_Tyr_Ser-Thr 1.20E-42 CL0016 Cla PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla02g00126 Cla_Chr02 FPKM 40.583332 45.100742 41.124493 42.926113 36.116158 29.604216 37.496147 34.257732 35.394913 37.864357