Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00132 ATGACGCTGCTTACGTGGACAAATGACATGGAAAACGAGTTCCCATCGTCGTCTTCTTCCGCTGATATGACAATTTTTTCCTTCTTCACTAGAGCTTCGAGAGCTTTTCATGGCTCCCCTGCATATTCAAAGCTTCTACTCATCAGCACCCTAAGTAGCGGAGGTCTATTGGCATATGCAGATTCACAATCAGACGTTGACAGTCCTATTGAAGAGTGCCGAAAAAAGAGAATTCTAGTGCTTGGAACAGGATGGGCCGGTACCAGTTTCCTCAAGGATCTGGATGCTTCAAAATATGATGTTCAGGTTGTTTCGCCTCAAAATTATTTCTCATTTACTCCTTTATTGCCTAGTGTTACATGTGGATCAGTTGAAGCACGAAGCATTGTTGAACCAGTTCGAAACATCGTGAAGAAGAGAAAAGGTGAAATTAAATTCTGGGAAGCTGAATGCATTAGGATTGATGCTGCTGACAAGAAGGTTTTCTGCCGGTCTAATGTTGACAACAACTTGGTTGGAAATAGGGAGTTTGCCTTAGAATATGACTATTTGATAATAGCAATGGGAGCGCAAGTTAATACTTTTAATACTCCTGGTGTGAAGGAGAACTGCCATTTTCTCAAGGAAGTGGAAGATGCTCAGAAGATCCGCAGAAGTGTGATAGATTGCTTTGAAATGGCGGTGATTCCTAGTCTAAGTGAAGAAGAGCGAAGGAGAAATCTTCATTTCGTTATTGTTGGAGGGGGTCCCACTGGGGTTGAATTTGCTGCAGAGCTTCATGACTTTTTTGAAGAAGATTTAGTAAACTTATATCCTTCGGTTAAAGATCTGGTGAAAATTTCAGTAATTCAATCCGGAGATCACATCTTGAATGCGTTTGATGAAAGAATTAGTTCATTTGCCGAGCAAAAATTCCTAAGGGACGGTATCGATGTGTACACAGGATGTCGAGTTGTCAGTGTATCTGATAAAGAAATTAAGATGAAGGTGAAATCAACTGGAGAACTTTGTTCAATGCCGCATGGACTAATTGTGTGGTCTACGGGCATTATGACTCGTCCTGTTGTGAAGGATTTCATGGAGCAGATTGGCCAGGGTAGTAGACGCATTCTAGCCACTGATGAATGGCTTCAAGTGAAGGGCGCTCAAAATGTGTATGCCATTGGTGATTGTGCTACAATTGACCAACGTAAAATTATGGAAGATATCGCCGCCATATTTAAAGCCGCAGACAAAGATAACTCTGGAACCCTGACAGTTACAGAATTTCAAGATGTTCTAGATGATATCATCATAAGGTATCCTCAAGTAGAAATATATTTGAGGAGCAAACATCTACGCGATGTAAAAGATCTATTAAAAGATTCTCAGGGACATGAGAACGAAATAGATATTGAAGGATTTAAGTCAGCTCTTTCTCATGCTGACACGCAGATGAAAAGTCTGCCTGCTACTGCACAGGTTGCTGCCCAACAAGGTGCGTATCTTTGCAGGTGCTTCAACCGCAGGGAGCATTGCACTGAGAATCCTGAAGGCCCTCGACGTTTTAAGAGTTCTGGACGTCATCAGTTTCTTCCGTTTCGGTACAAGCACTTGGGACAGTTCGCTCCTTTAGGGGGAGAACAAGCAGCTGCAGAACTCCCTGGAGATTGGGTTTCCATGGGTCACAGCACTCAATGGCTATGGTATTCTGTATATGCAAGCAAGCAAGTCAGCTGGCGCACAAGGTATCTAGTGGTATCAGATTGGACAAGGAAGTTCATATTTGGAAGAGACTCAAGCCGCATCTGA 1791 42.66 MTLLTWTNDMENEFPSSSSSADMTIFSFFTRASRAFHGSPAYSKLLLISTLSSGGLLAYADSQSDVDSPIEECRKKRILVLGTGWAGTSFLKDLDASKYDVQVVSPQNYFSFTPLLPSVTCGSVEARSIVEPVRNIVKKRKGEIKFWEAECIRIDAADKKVFCRSNVDNNLVGNREFALEYDYLIIAMGAQVNTFNTPGVKENCHFLKEVEDAQKIRRSVIDCFEMAVIPSLSEEERRRNLHFVIVGGGPTGVEFAAELHDFFEEDLVNLYPSVKDLVKISVIQSGDHILNAFDERISSFAEQKFLRDGIDVYTGCRVVSVSDKEIKMKVKSTGELCSMPHGLIVWSTGIMTRPVVKDFMEQIGQGSRRILATDEWLQVKGAQNVYAIGDCATIDQRKIMEDIAAIFKAADKDNSGTLTVTEFQDVLDDIIIRYPQVEIYLRSKHLRDVKDLLKDSQGHENEIDIEGFKSALSHADTQMKSLPATAQVAAQQGAYLCRCFNRREHCTENPEGPRRFKSSGRHQFLPFRYKHLGQFAPLGGEQAAAELPGDWVSMGHSTQWLWYSVYASKQVSWRTRYLVVSDWTRKFIFGRDSSRI 596
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1458716 1464178 + ClCG02G001290.1 Cla02g00132 266258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00132 596 ProSitePatterns EF-hand calcium-binding domain. 411 423 IPR018247 -
Cla02g00132 596 Gene3D - 445 595 - -
Cla02g00132 596 Gene3D - 68 419 - -
Cla02g00132 596 SUPERFAMILY FAD/NAD(P)-binding domain 241 395 IPR036188 -
Cla02g00132 596 PANTHER NADH DEHYDROGENASE 66 596 IPR045024 GO:0003954|GO:0006116
Cla02g00132 596 SMART efh_1 402 430 IPR002048 GO:0005509
Cla02g00132 596 ProSiteProfiles EF-hand calcium-binding domain profile. 398 433 IPR002048 GO:0005509
Cla02g00132 596 PRINTS FAD-dependent pyridine nucleotide reductase signature 242 260 - -
Cla02g00132 596 PRINTS FAD-dependent pyridine nucleotide reductase signature 181 199 - -
Cla02g00132 596 PRINTS FAD-dependent pyridine nucleotide reductase signature 78 97 - -
Cla02g00132 596 Pfam Pyridine nucleotide-disulphide oxidoreductase 77 405 IPR023753 GO:0016491
Cla02g00132 596 SUPERFAMILY EF-hand 394 482 IPR011992 -
Cla02g00132 596 SUPERFAMILY FAD/NAD(P)-binding domain 75 294 IPR036188 -
Cla02g00132 596 PANTHER EXTERNAL ALTERNATIVE NAD(P)H-UBIQUINONE OXIDOREDUCTASE B1, MITOCHONDRIAL 66 596 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00132 Cla-Chr2:1458716 Cla02g01903 Cla-Chr2:34194623 1.87E-14 dispersed
Cla01g01138 Cla-Chr1:19020637 Cla02g00132 Cla-Chr2:1458716 6.07E-09 transposed
Cla01g02215 Cla-Chr1:36111535 Cla02g00132 Cla-Chr2:1458716 1.88E-14 wgd
Cla02g00132 Cla-Chr2:1458716 Cla02g01697 Cla-Chr2:31839586 0 wgd
Cla02g00132 Cla-Chr2:1458716 Cla03g00519 Cla-Chr3:5738128 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00132 K03885 - csv:101203130 1097.8