Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00173 ATGGAGCTCTTTCGTTGTCTTGTCTTTCTAATTGTATGTGTTTCAGGACTTGCTAGCTCAAGCCAAGCTCAGCTAGAGCTTGACTACTATGGAAAGAGCTGCCCTCGTGCTGAGAAAATCGTCTATGATTACGTTTACAAGAACATTCCCAAGGTTCCTACCTTGGCTTCTGCCTTACTTAGAATGCATTTCCACGACTGCTTCGTTCGGGGTTGTGATGCATCTGTACTCTTGAACTCAACTACGAACAACCAAAGTGAGAAAGTATCTCCACCAAATCTAACACTGAGAGGCTTCGACTTCATTGATAAAATTAAGAAACTTTTGGAAGCTGAATGCCCTGGAGTCGTCTCCTGCGCCGACATTATTTCTTTAGTTGCAAGAGACTCCGTCGTTGCTATCGGCGGTCCATTCTGGAGGGTTCCGACCGGAAGGAGAGATGGTTTGATCTCAAGATCCACAGAAGCTTTGGTGAACATTCCTCCACCGTTTGCCAATTTGTCAACTCTACAACAACAATTCGCTAACAAGGGTCTTGATCTCAAAGACTTGGTTTTGCTTTCAGGAGCGCACACAATTGGGGTATCTCACTGCTCGTCCTTTACGCGGCGGCTCTACAACTTCACCGGCGTGGGAGATCAAGACCCATCACTTGACAGTCAGTACGCCGCAAATCTCAAGGCAAACAAATGCAAAAGCATTAGCGCCAACGGCATTGTGGAAATGGACCCTGGCAGTTTCAAAACCTTCGATCTCAGCTACTACTCCCTTCTTCTGAAGCGCCGAGGGCTGTTCCAGTCCGACGCGGCTCTGACCACCAGCGCAGCCACCAAGGCCTTCGTCACCGACCTGCTCAATGGCTCCGTTCAGAACTTTTTCGCCCAGTTTGGGTTAGCCATGGAGAAGATGGGTCGCATAGGGGTCAAGACTGGGTCCGAGGCTCAGAAAGTTCAGCTCTCGCAATTGACAAGCCATCGAATCTGTTCTATTCTATTATTTTTGCACATTTTCCGATTTTTGGCAATCTTTTTATGTGTTCTTTATCAGAAAGGCCACTGTTCTCGCCCAAGTTGCTCCTTTGCTCACGGGAACGCTGAACTCAGACGATTTGCTGGTGGTTCTACCGGTAGACAGGAATATAGAGGAAATGATTTAAGGCATAAGCTTGACAGCAGACATTCTCCCCTGCAGGAAAGGGATTCTAGAGGGCGACATGGACCTCGTGTTGCAGAGTATAGCTCATCTTGGTCACTTGAACGACATAGTGACCGTAAGAGGAGGAAAAAGGAACTTGGGGATCCCCGTCGTGATTATTCTGGAAATTTGAGGATTTCAGATAGAAATGAAGAAGAAGATAGAGAAGGGAAAACCTTGTTTACTTCTAGAGACACTCTTGAGGGGCAGTTAAACAAGATGCAGACAGATATTGAGATGGCTGAGCACCACAAACACCAAGCTGAGGTCTACCTAGACGAGAAAATTCAAGAAGTGGATAGTTTGACTTCTAGAATTCAGGAGCTAGAATCTCAATTACATAAAGAGAGGCAGGAGTGTAGAAGGATCAAATCAAAAATCAAGAAGTTTGTCAAAGCACATAATCGTTACTCAAGATCGCAAGTCCGACTTCAACAGTTGGGAGATCAGCTGGGGCCAGATGTTAATAAAATTGGTGCCAATGAAGAAGACTCAAGTATCAATATTGTGAGCGATGGAGAGGACCCTGGTTATCATACGTCAGGCCCTTTTCATGACCTGCAAAAAGACACTTCTGTAAGCAAGAGGAAGATGCATGCTGTTCAAGATACTGCAGAGAACTCAAATCGAGCTGATTTAAACAAAGGAAATAAAGAGGCAGTGGTGAGAAGGATCTCTCGGTGGAATGCCCATCCTGCTAAATCAGTATATAGCAAAATTGAAGCGGTCGGCAGTGAAATCAGTGATCTGATACCTGCAGCAAATGAAAGCAGGCAGAAGAGGGGAAGGACATCTAGTAGTGTTTCTACTGCGGACAAGGTTAGGGGTCTAGAGTCAGGTGTTGTAGTGCCATTAACCAGCATGGCTGCCCATGCAGTTGATGAGGAAGTTGATATTGACTTGGAAATCAACAATGAAGTGAAAGAACCGAGGGAAAGTACTAAGGAGGCTGCGTCAGGCGGCCTGCCTTTCTTTCCCCCTCCACCACCTCCTCCAATCCGTGAATTCAACCATTCAAGGTATGAGGGTGAAGATCAAAATGTAGATGTGGAGGTGGTTGATGATGAAAGGGAAGGTATGGACGATGCTTAA 2286 46.02 MELFRCLVFLIVCVSGLASSSQAQLELDYYGKSCPRAEKIVYDYVYKNIPKVPTLASALLRMHFHDCFVRGCDASVLLNSTTNNQSEKVSPPNLTLRGFDFIDKIKKLLEAECPGVVSCADIISLVARDSVVAIGGPFWRVPTGRRDGLISRSTEALVNIPPPFANLSTLQQQFANKGLDLKDLVLLSGAHTIGVSHCSSFTRRLYNFTGVGDQDPSLDSQYAANLKANKCKSISANGIVEMDPGSFKTFDLSYYSLLLKRRGLFQSDAALTTSAATKAFVTDLLNGSVQNFFAQFGLAMEKMGRIGVKTGSEAQKVQLSQLTSHRICSILLFLHIFRFLAIFLCVLYQKGHCSRPSCSFAHGNAELRRFAGGSTGRQEYRGNDLRHKLDSRHSPLQERDSRGRHGPRVAEYSSSWSLERHSDRKRRKKELGDPRRDYSGNLRISDRNEEEDREGKTLFTSRDTLEGQLNKMQTDIEMAEHHKHQAEVYLDEKIQEVDSLTSRIQELESQLHKERQECRRIKSKIKKFVKAHNRYSRSQVRLQQLGDQLGPDVNKIGANEEDSSINIVSDGEDPGYHTSGPFHDLQKDTSVSKRKMHAVQDTAENSNRADLNKGNKEAVVRRISRWNAHPAKSVYSKIEAVGSEISDLIPAANESRQKRGRTSSSVSTADKVRGLESGVVVPLTSMAAHAVDEEVDIDLEINNEVKEPRESTKEAASGGLPFFPPPPPPPIREFNHSRYEGEDQNVDVEVVDDEREGMDDA 761
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1780905 1790658 - ClCG02G001780.2 Cla02g00173 266299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00173 761 Coils Coil 490 524 - -
Cla02g00173 761 ProSiteProfiles Plant heme peroxidase family profile. 24 332 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla02g00173 761 CDD secretory_peroxidase 24 313 IPR033905 GO:0004601|GO:0042744
Cla02g00173 761 Gene3D Peroxidase, domain 2 161 303 - -
Cla02g00173 761 Pfam Peroxidase 49 283 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla02g00173 761 MobiDBLite consensus disorder prediction 702 761 - -
Cla02g00173 761 PRINTS Plant peroxidase signature 298 311 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla02g00173 761 PRINTS Plant peroxidase signature 34 53 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla02g00173 761 PRINTS Plant peroxidase signature 58 78 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla02g00173 761 PRINTS Plant peroxidase signature 241 256 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla02g00173 761 PRINTS Plant peroxidase signature 257 274 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla02g00173 761 PRINTS Plant peroxidase signature 116 126 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla02g00173 761 PRINTS Plant peroxidase signature 97 110 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla02g00173 761 PRINTS Plant peroxidase signature 135 150 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla02g00173 761 PRINTS Plant peroxidase signature 182 194 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla02g00173 761 PANTHER PEROXIDASE 25-RELATED 9 314 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla02g00173 761 MobiDBLite consensus disorder prediction 374 456 - -
Cla02g00173 761 Gene3D - 29 315 - -
Cla02g00173 761 PRINTS Haem peroxidase superfamily signature 117 134 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla02g00173 761 PRINTS Haem peroxidase superfamily signature 135 147 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla02g00173 761 PRINTS Haem peroxidase superfamily signature 243 258 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla02g00173 761 PRINTS Haem peroxidase superfamily signature 183 198 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla02g00173 761 PRINTS Haem peroxidase superfamily signature 56 70 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla02g00173 761 MobiDBLite consensus disorder prediction 746 761 - -
Cla02g00173 761 MobiDBLite consensus disorder prediction 380 407 - -
Cla02g00173 761 PANTHER PEROXIDASE 9 314 - -
Cla02g00173 761 Coils Coil 462 482 - -
Cla02g00173 761 ProSitePatterns Peroxidases active site signature. 56 67 IPR019794 GO:0004601
Cla02g00173 761 ProSiteProfiles Zinc finger C3H1-type profile. 344 365 IPR000571 GO:0046872
Cla02g00173 761 SUPERFAMILY Heme-dependent peroxidases 24 315 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cla02g00173 761 MobiDBLite consensus disorder prediction 417 456 - -
Cla02g00173 761 ProSitePatterns Peroxidases proximal heme-ligand signature. 183 193 IPR019793 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00173 Cla-Chr2:1780905 Cla06g00517 Cla-Chr6:6258343 1.02E-94 dispersed
Cla02g00173 Cla-Chr2:1780905 Cla02g00175 Cla-Chr2:1795194 3.77E-47 proximal
Cla02g00173 Cla-Chr2:1780905 Cla02g00824 Cla-Chr2:10994851 5.29E-155 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60572 PF00141 peroxidase 1.70E-73 CL0617 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00173 K00430 - csv:101222960 672.544